Browse Element(s) Details


Os.8657.1.S1_at

Description gb:AK062048.1
DB_XREF= gi:32972066
TID=Os.8657.1
CNT=61
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.8657 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023107A15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-044-A12, full insert sequence.
FL= gb:AK062048.1 gb:AK100597.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1784011/11Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
LOC_Os09g1783011/11Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17810Os.52715.1.S1_at11/119+10897051..10899226expressed protein
LOC_Os09g17820OsAffx.29901.1.S1_at11/119+10899665..10900382hypothetical protein
LOC_Os09g17830Os.8657.1.S1_at11/119+10904712..10908704Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
LOC_Os09g17840Os.8657.1.S1_at11/119+10914274..10918390Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
LOC_Os09g17840Os.47940.1.S1_at2/119+10914274..10918390Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
LOC_Os09g17840Os.37995.1.S1_at1/119+10914274..10918390Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
LOC_Os09g17850Os.27991.1.S1_at11/119+10921465..10925975histone acetyl transferase, putative, expressed
LOC_Os09g17860OsAffx.17763.1.S1_at11/119+10926163..10926973expressed protein
LOC_Os09g17870Os.47940.1.S1_at11/119+10927395..10929717Cytidylyltransferase family protein, expressed
LOC_Os09g17870OsAffx.24902.1.S1_s_at1/119+10927395..10929717Cytidylyltransferase family protein, expressed
LOC_Os09g17880OsAffx.29902.1.S1_at10/119+10935862..10938399leaf senescence-associated receptor-like protein kinase, putative
LOC_Os09g17880Os.57395.1.S1_at1/119+10935862..10938399leaf senescence-associated receptor-like protein kinase, putative
LOC_Os09g17890OsAffx.17764.1.S1_at11/119+10942485..10946943hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009306biological_processprotein secretion
GO:0016020cellular_componentmembrane
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8657.1.S1_at--700--9532Chr09:10914815..10914839 (25 bp)
TCTTTGGTTTTTGATACCGTTGCTT
LOC_Os09g17840
Os.8657.1.S1_at--108--10272Chr09:10914806..10914830 (25 bp)
TTTGATACCGTTGCTTGAGGACATT
LOC_Os09g17840
Os.8657.1.S1_at--122--8352Chr09:10914733..10914757 (25 bp)
GGCTGTTTATGGATGTAATTGGAGA
LOC_Os09g17840
Os.8657.1.S1_at--1060--5672Chr09:10914710..10914734 (25 bp)
GAGCTTAAAGTCAGTTTAGGTTGCC
LOC_Os09g17840
Os.8657.1.S1_at--978--3592Chr09:10914682..10914706 (25 bp)
CTTATTTGAAAATGAGGTACTCGTT
LOC_Os09g17840
Os.8657.1.S1_at--505--672Chr09:10914671..10914695 (25 bp)
ATGAGGTACTCGTTTAAGGTTCTGC
LOC_Os09g17840
Os.8657.1.S1_at--537--6992Chr09:10914666..10914690 (25 bp)
GTACTCGTTTAAGGTTCTGCGTGTG
LOC_Os09g17840
Os.8657.1.S1_at--1033--5692Chr09:10914555..10914579 (25 bp)
GACTATGTAGTAACCATAATTTGGG
LOC_Os09g17840
Os.8657.1.S1_at--680--4292Chr09:10914542..10914566 (25 bp)
CCATAATTTGGGATCAGTTTTAGTC
LOC_Os09g17840
Os.8657.1.S1_at--55--7672Chr09:10914533..10914557 (25 bp)
GGGATCAGTTTTAGTCATTTGGAAC
LOC_Os09g17840
Os.8657.1.S1_at--322--7132Chr09:10914520..10914544 (25 bp)
GTCATTTGGAACTGAATATATTATC
LOC_Os09g17840
Target Sequence 
TCTTTGGTTTTTGATACCGTTGCTTGAGGACATTGTTATNCCAATAGTTGGATCTTCTTNCAAATGAAAGTACTTCTNGG
CCGGCTGTTTATGGATGTAATTGGAGAGCTTAAAGTCAGTTTAGGTTGCCNGACTTATTTGAAAATGAGGTACTCGTTTA
AGGTTCTGCGTGTGNTTTCAGGCCNGTATGGTGGTATATGNCCTGTTTCAAGTACAGNCATGGCCATCATCGATCCGTCT
TCCGCAGCCTTCTNTNTTTTGACTATGTAGTAACCATAATTTGGGATCAGTTTTAGTCATTTGGAACTGAATATATTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis