Browse Element(s) Details


Os.8667.1.S1_at

Description gb:AK072560.1
DB_XREF= gi:32982583
TID=Os.8667.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8667 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-022-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133B04, full insert sequence.
FL= gb:AK072560.1 gb:AK104046.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4029011/11KH domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40270Os.8786.4.S1_x_at11/115+23570198..23579167leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40270Os.8786.3.S1_x_at11/115+23570198..23579167leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40270Os.8786.3.S1_at11/115+23570198..23579167leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40270Os.8786.1.S1_a_at11/115+23570198..23579167leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40280Os.49461.1.S1_at10/115+23579143..23583475B3 DNA binding domain containing protein, expressed
LOC_Os05g40290Os.8667.1.S1_at11/115+23589542..23594088KH domain-containing protein, putative, expressed
LOC_Os05g40300NANA5+23602655..23602976expressed protein
LOC_Os05g40310OsAffx.4573.1.S1_at11/115+23605464..23607764expressed protein
LOC_Os05g40320Os.53940.1.S1_at11/115+23609733..23614179pentatricopeptide, putative, expressed
LOC_Os05g40320Os.53940.1.S2_at10/115+23609733..23614179pentatricopeptide, putative, expressed
LOC_Os05g40320OsAffx.14143.1.S1_at1/115+23609733..23614179pentatricopeptide, putative, expressed
LOC_Os05g40330Os.50012.1.S1_at11/115+23614535..23617464auxin efflux carrier family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8667.1.S1_at--313--2771Chr05:23590058..23590082 (25 bp)
AAGAGACAGCAACTCCGAGAACTTG
LOC_Os05g40290
Os.8667.1.S1_at--955--5471Chr05:23590040..23590064 (25 bp)
GAACTTGCTTTGTTGAACTCACCAC
LOC_Os05g40290
Os.8667.1.S1_at--505--8151Chr05:23590008..23590032 (25 bp)
GGAAAGCCCACATCCTGGTAGTGCT
LOC_Os05g40290
Os.8667.1.S1_at--300--8591Chr05:23589993..23590017 (25 bp)
TGGTAGTGCTTCTCCATTCAGTAAT
LOC_Os05g40290
Os.8667.1.S1_at--644--3191Chr05:23589894..23589918 (25 bp)
CAATCCATGCCTTCACAACTTAAAT
LOC_Os05g40290
Os.8667.1.S1_at--780--811Chr05:23589846..23589870 (25 bp)
ATGGTGTTGGCATTCGCGCGGCAAT
LOC_Os05g40290
Os.8667.1.S1_at--635--4571Chr05:23589831..23589855 (25 bp)
GCGCGGCAATCTGTTACTGCTAGAA
LOC_Os05g40290
Os.8667.1.S1_at--913--1471Chr05:23589810..23589834 (25 bp)
AGAATTTTGATCTCCATGTGACATT
LOC_Os05g40290
Os.8667.1.S1_at--480--2231Chr05:23589745..23589769 (25 bp)
AAATCCTCCCCTATGGTTGTATAAT
LOC_Os05g40290
Os.8667.1.S1_at--290--6091Chr05:23589644..23589668 (25 bp)
GAGTACCAGGGATTTGTCTGCCTTG
LOC_Os05g40290
Os.8667.1.S1_at--771--2491Chr05:23589603..23589627 (25 bp)
AACATGTTTGCAAGCTGCTATCGAA
LOC_Os05g40290
Target Sequence 
AAGAGACAGCAACTCCGAGAACTTGCTTTGTTGAACTCACCACTTAGAGAGGAAAGCCCACATCCTGGTAGTGCTTCTCC
ATTCAGTAATGGTGGCATGAAACGGATGAAACAATGACTGGATGCTTGTTCCTCCTCCTCCTTGACCCTCCAAGAGAAAT
CAATCAATCCATGCCTTCACAACTTAAATTTTTCATGAGCAAAGCTTTCATGATGGTGTTGGCATTCGCGCGGCAATCTG
TTACTGCTAGAATTTTGATCTCCATGTGACATTTTAACTCATAACTGACAGATGATGGATGAGTAGCGAGGCGAAATCCT
CCCCTATGGTTGTATAATTAGAACATTTGATTTATTTATTACTGGTAGTGCTGAGATACTGATAGTGTGAAGAATTCTTA
GTTACTGTGAGCTAGAGTACCAGGGATTTGTCTGCCTTGGGTGACTTGTCTGAGCAACATGTTTGCAAGCTGCTATCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8667.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis