Browse Element(s) Details


Os.8712.1.S2_at

Description gb:AK120950.1
DB_XREF= gi:37990573
TID=Os.8712.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.8712 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013139I18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038L09, full insert sequence.
FL= gb:AK120950.1 gb:AK068194.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3332011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33300OsAffx.29488.1.S1_x_at11/118+20628692..20631011Cytochrome P450 family protein
LOC_Os08g33320Os.8712.1.S2_at11/118+20643254..20649547expressed protein
LOC_Os08g33320Os.8712.1.S1_at11/118+20643254..20649547expressed protein
LOC_Os08g33330Os.16162.1.S1_at10/118+20657585..20661844myosin-like protein, putative, expressed
LOC_Os08g33340Os.9414.1.S1_at11/118+20664175..20668866UV excision repair protein Rad23 containing protein, expressed
LOC_Os08g33350Os.8489.1.A1_at11/118+20669715..20672354RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8712.1.S2_at--175--671Chr08:20643822..20643846 (25 bp)
ATGAAACTCATTCTGCCAAGCCATA
LOC_Os08g33320
Os.8712.1.S2_at--1087--5271Chr08:20643791..20643815 (25 bp)
GAATGGTGCCACAAAGCAGTTCAGA
LOC_Os08g33320
Os.8712.1.S2_at--769--9731Chr08:20643752..20643776 (25 bp)
TAAACTTCGTCCATGTATTTCGGCT
LOC_Os08g33320
Os.8712.1.S2_at--38--10211Chr08:20643737..20643761 (25 bp)
TATTTCGGCTCCCAGATCCCCAGAA
LOC_Os08g33320
Os.8712.1.S2_at--1007--8651Chr08:20643656..20643680 (25 bp)
TGTGGATTTGCCTCGTGGAACTAAA
LOC_Os08g33320
Os.8712.1.S2_at--756--1491Chr08:20643591..20643615 (25 bp)
AGCAAACCCATGCTGGAAGCCTGGA
LOC_Os08g33320
Os.8712.1.S2_at--349--5651Chr08:20643523..20643547 (25 bp)
GACAGCATTGCTTGTTGTTCTGCTT
LOC_Os08g33320
Os.8712.1.S2_at--530--9071Chr08:20643503..20643527 (25 bp)
TGCTTCTGCATCTGTGCTCAAGCCA
LOC_Os08g33320
Os.8712.1.S2_at--1025--6131Chr08:20643452..20643476 (25 bp)
GAGGGATTTGCAGATTAACTTTACA
LOC_Os08g33320
Os.8712.1.S2_at--506--3971Chr08:20643395..20643419 (25 bp)
CGGTAGTAGATCACAATCACTGTTT
LOC_Os08g33320
Os.8712.1.S2_at--213--391Chr08:20643380..20643404 (25 bp)
ATCACTGTTTTACAGCTTTATGGCT
LOC_Os08g33320
Target Sequence 
ATGAAACTCATTCTGCCAAGCCATATGACAGGAATGGTGCCACAAAGCAGTTCAGAAATCATACAGGAGATAAACTTCGT
CCATGTATTTCGGCTCCCAGATCCCCAGAACCCCAAAGAAGGGGAAGCCCTCGGAGATTTGACAGGGGCTTCGGGAGGCA
GCTGGGTGTGGATTTGCCTCGTGGAACTAAAGAAGATAATAAAAATCCTTTCAGATATGATTGAANGGGAAAGCAAACCC
ATGCTGGAAGCCTGGAATTGAATCATAAGGCTCACTGCTATTTGACACAGGATTACCTTGACAGCATTGCTTGTTGTTCT
GCTTCTGCATCTGTGCTCAAGCCACAGAAAAGCTGAAATCGTGCACTTGGGAGGGATTTGCAGATTAACTTTACAATTTT
CTTCTTTTCGTTTGTAAATATTTATATCGGTAGTAGATCACAATCACTGTTTTACAGCTTTATGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8712.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis