Browse Element(s) Details


Os.8730.1.S1_at

Description gb:AK099208.1
DB_XREF= gi:32984417
TID=Os.8730.1
CNT=32
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.8730 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ATP citrate lyase (P0487H02.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013055I05, full insert sequence.
FL= gb:AK062011.1 gb:AK099208.1 gb:AK070568.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1945011/11ATP-citrate synthase subunit 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19400Os.31119.1.S1_at11/111+10973963..10976748expressed protein
LOC_Os01g19410Os.12557.1.S1_at11/111+10977518..10980117expressed protein
LOC_Os01g19420Os.8035.1.S1_at11/111+10982871..10983769transposon protein, putative, unclassified, expressed
LOC_Os01g19430Os.36371.1.S1_at10/111+10987597..109883953'-5' exonuclease family protein, expressed
LOC_Os01g19440OsAffx.11114.1.S1_x_at11/111+10994371..10996072Pectinesterase family protein
LOC_Os01g19440OsAffx.11114.1.S1_at11/111+10994371..10996072Pectinesterase family protein
LOC_Os01g19450Os.8730.1.S1_at11/111+10996114..11002756ATP-citrate synthase subunit 1, putative, expressed
LOC_Os01g19460OsAffx.11115.3.S1_x_at11/111+11011027..11017142hypothetical protein
LOC_Os01g19470Os.11690.1.S1_at10/111+11022226..11035610Cna protein B-type domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006085biological_processacetyl-CoA biosynthesis
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009346cellular_componentcitrate lyase complex
GO:0004776molecular_functionsuccinate-CoA ligase (GDP-forming) activity
GO:0008815molecular_functioncitrate (pro-3S)-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8730.1.S1_at--668--3611Chr01:10996930..10996954 (25 bp)
CTTGGATCTTCTTTCTGGCAGTGGA
LOC_Os01g19450
Os.8730.1.S1_at--580--9771Chr01:10996858..10996882 (25 bp)
TAATGGACTCTTTGTGCTTGCGCGT
LOC_Os01g19450
Os.8730.1.S1_at--950--6731Chr01:10996840..10996859 (20 bp)
GTTCAATTGGTCTCATCGGGCACAC
LOC_Os01g19450
Os.8730.1.S1_at--604--9431Chr01:10996639..10996660 (22 bp)
TCGGGCACACCTTTGACCAGAAGAG
LOC_Os01g19450
Os.8730.1.S1_at--637--6171Chr01:10996583..10996607 (25 bp)
GAGGATGTCCTCTACACCAAGTGAA
LOC_Os01g19450
Os.8730.1.S1_at--965--6511Chr01:10996532..10996556 (25 bp)
GATATTCCAGCTTTGTACACACTTC
LOC_Os01g19450
Os.8730.1.S1_at--665--8931Chr01:10996438..10996462 (25 bp)
TGACCGCTGTTGTTGCGTGTTTCAA
LOC_Os01g19450
Os.8730.1.S1_at--1111--6031Chr01:10996399..10996423 (25 bp)
GAGATCTGTTCCTGATTTTTGTCAA
LOC_Os01g19450
Os.8730.1.S1_at--1130--7431Chr01:10996322..10996346 (25 bp)
GTGTACTATCGATTCTCTCAACGAA
LOC_Os01g19450
Os.8730.1.S1_at--1162--6331Chr01:10996281..10996305 (25 bp)
GATGCTAATGTGTTCACCGGTCGTG
LOC_Os01g19450
Os.8730.1.S1_at--712--7411Chr01:10996238..10996262 (25 bp)
GTGATTGTCAATGTGCCACTTCGAT
LOC_Os01g19450
Target Sequence 
CTTGGATCTTCTTTCTGGCAGTGGAATGTTCAGCAAACAAGAAATCGATGAGATTGTTGAGATTGGTTACCTTAATGGAC
TCTTTGTGCTTGCGCGTTCAATTGGTCTCATCGGGCACACCTTTGACCAGAAGAGGCTCAAGCAACCACTCTACCGCCAC
CCATGGGAGGATGTCCTCTACACCAAGTGAAGACTCGGTTGTTCTTAATATTACCTAGATATTCCAGCTTTGTACACACT
TCAAAAGGTCAAGCGAAATTGCATAAAAGTGAACGCCGATGAAACTAGGGGGAGAAGAATGGGGTCACCGGTGACCGCTG
TTGTTGCGTGTTTCAAGTTAGTTGCAAATTGAGATCTGTTCCTGATTTTTGTCAAAGCAAGAACCATTAGGACAACATGG
GGGATATTGGAAATTTACTGTATCATCGTGTACTATCGATTCTCTCAACGAAAAAAAAAANNNTNTAGTCTGATGCTAAT
GTGTTCACCGGTCGTGGAGAGTGTTGTAATGTTTGTGATTGTCAATGTGCCACTTCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8730.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis