Browse Element(s) Details


Os.8734.1.S1_a_at

Description gb:AK105121.1
DB_XREF= gi:32990330
TID=Os.8734.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8734 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-B12, full insert sequence.
FL= gb:AK060048.1 gb:AK105121.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3581011/11NC domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35780OsAffx.30144.1.S1_at11/119+20587366..20588179expressed protein
LOC_Os09g35790Os.11941.2.S1_at11/119+20590771..20594662HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g35790Os.54707.1.S1_x_at11/119+20590771..20594662HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g35790Os.11941.1.S1_at10/119+20590771..20594662HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g35790OsAffx.30145.1.S1_at7/119+20590771..20594662HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g35800Os.8507.1.S1_at11/119+20600134..20602522UDP-glucose 4-epimerase, putative, expressed
LOC_Os09g35810Os.8734.1.S1_a_at11/119+20605389..20608644NC domain-containing protein, putative, expressed
LOC_Os09g35820NANA9+20609072..20610125hypothetical protein
LOC_Os09g35830NANA9+20613276..20613862hypothetical protein
LOC_Os09g35840Os.24098.1.S1_a_at4/119+20619099..20621316RNA-binding protein, putative
LOC_Os09g35840Os.56892.1.S1_x_at4/119+20619099..20621316RNA-binding protein, putative
LOC_Os09g35850Os.56892.1.S1_at11/119+20629236..20633047RNA recognition motif family protein, expressed
LOC_Os09g35850Os.56892.1.S1_x_at10/119+20629236..20633047RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8734.1.S1_a_at--384--10711Chr09:20606119..20606143 (25 bp)
TTGCGAGGACTTTGCACTCTACTGC
LOC_Os09g35810
Os.8734.1.S1_a_at--1112--2151Chr09:20605864..20605888 (25 bp)
ACACCTTGGTAGACGCCTGATTGAA
LOC_Os09g35810
Os.8734.1.S1_a_at--712--2911Chr09:20605835..20605859 (25 bp)
AAGGATCAGTGAACGTACGGTCAGA
LOC_Os09g35810
Os.8734.1.S1_a_at--349--5551Chr09:20605810..20605834 (25 bp)
GAAACCGAAAACCTTGCTGCCTATG
LOC_Os09g35810
Os.8734.1.S1_a_at--70--7771Chr09:20605769..20605793 (25 bp)
GGTGATGGCGACTATATACCGCTCT
LOC_Os09g35810
Os.8734.1.S1_a_at--716--3691Chr09:20605758..20605782 (25 bp)
CTATATACCGCTCTTCGTCGATAAT
LOC_Os09g35810
Os.8734.1.S1_a_at--744--2391Chr09:20605710..20605734 (25 bp)
AAACTTTACTCTTCGCCATAATAAG
LOC_Os09g35810
Os.8734.1.S1_a_at--1061--6491Chr09:20605676..20605700 (25 bp)
GATATGTACCTCTGAAGCGTGTTCT
LOC_Os09g35810
Os.8734.1.S1_a_at--587--6711Chr09:20605656..20605680 (25 bp)
GTTCTGATTCAGTTAAGACCACACT
LOC_Os09g35810
Os.8734.1.S1_a_at--923--1371Chr09:20605641..20605665 (25 bp)
AGACCACACTTCACATGATCAATTG
LOC_Os09g35810
Os.8734.1.S1_a_at--693--6451Chr09:20605625..20605649 (25 bp)
GATCAATTGAGCTACATTCCAAACT
LOC_Os09g35810
Target Sequence 
TTGCGAGGACTTTGCACTCTACTGCAAAACTGGGCTTCTTCCTGTTGAGGAACCTGGCATTGGAACAAGTGGGCAAGCAT
CTTCCGCCATTGGAGTGNCATTGGNCAGCTCTTCTGTCCACTCCACTTAAGCTTTNTGCTGNTGGTCCACTTGGAATGGC
CACTGTCACAGNTGGGATGTACTGTGCTGGTAGATACATCACTGACATAGGAGTAAGAAAGGATGTGGCGAANATTGAAG
TGGAGAATTTATCATCACACCTTGGTAGACGCCTGATTGAAGATGAAGGATCAGTGAACGTACGGTCAGAGAAACCGAAA
ACCTTGCTGCCTATGAAGAGAAAGCGTGAGAGGTGATGGCGACTATATACCGCTCTTCGTCGATAATTGGTTCAGAACTG
TGCATAATTTAAACTTTACTCTTCGCCATAATAAGTTTGATATAGATATGTACCTCTGAAGCGTGTTCTGATTCAGTTAA
GACCACACTTCACATGATCAATTGAGCTACATTCCAAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8734.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis