Browse Element(s) Details


Os.8802.1.S1_at

Description gb:AK069802.1
DB_XREF= gi:32979826
TID=Os.8802.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8802 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023026H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023026H02, full insert sequence.
FL= gb:AK069802.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2216011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g22130Os.8901.1.S1_at11/112+13173638..13176600expressed protein
LOC_Os02g22130Os.8901.1.S2_at11/112+13173638..13176600expressed protein
LOC_Os02g22140Os.11794.1.S1_at11/112+13179015..13184649ADP-ribosylation factor At2g18390, putative, expressed
LOC_Os02g22150NANA2+13185548..13186233hypothetical protein
LOC_Os02g22160Os.8802.1.S1_at11/112+13200804..13203747expressed protein
LOC_Os02g22170OsAffx.29195.1.A1_at1/112+13206735..13209684retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22180NANA2+13210030..13213776Zinc knuckle family protein
LOC_Os02g22190Os.5035.1.S1_at11/112+13223111..13227348HGA1, putative, expressed
LOC_Os02g22190Os.20614.3.S1_x_at2/112+13223111..13227348HGA1, putative, expressed
LOC_Os02g22190Os.57121.1.S1_at1/112+13223111..13227348HGA1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8802.1.S1_at--857--9531Chr02:13203185..13203209 (25 bp)
TCTACTTCCCTGTGTTCGCGAGGCA
LOC_Os02g22160
Os.8802.1.S1_at--206--4071Chr02:13203203..13203227 (25 bp)
CGAGGCACTGCAGCCGTAATTGCTA
LOC_Os02g22160
Os.8802.1.S1_at--27--4131Chr02:13203326..13203350 (25 bp)
CGCACCCGGCGAGGTTCACGAGGAT
LOC_Os02g22160
Os.8802.1.S1_at--858--971Chr02:13203346..13203370 (25 bp)
AGGATGGAGGTCACGCCGGACTTCC
LOC_Os02g22160
Os.8802.1.S1_at--683--1011Chr02:13203475..13203499 (25 bp)
AGGTTCCTCAGATTCGCTCCAAAGG
LOC_Os02g22160
Os.8802.1.S1_at--855--91Chr02:13203486..13203510 (25 bp)
ATTCGCTCCAAAGGTCATGGGCTTT
LOC_Os02g22160
Os.8802.1.S1_at--944--6291Chr02:13203512..13203536 (25 bp)
GATGATGATGTGCAGCGAACGTTTT
LOC_Os02g22160
Os.8802.1.S1_at--356--2191Chr02:13203555..13203579 (25 bp)
ACAACTTTTCACATTCTTTGGTTTG
LOC_Os02g22160
Os.8802.1.S1_at--717--8771Chr02:13203578..13203602 (25 bp)
TGTTTTATTCGCCTATTCCACAGAC
LOC_Os02g22160
Os.8802.1.S1_at--892--71Chr02:13203592..13203616 (25 bp)
ATTCCACAGACCCAACGTATACATG
LOC_Os02g22160
Os.8802.1.S1_at--762--3091Chr02:13203723..13203747 (25 bp)
AATATAGAGTTTATTACACGCCCTC
LOC_Os02g22160
Target Sequence 
TCTACTTCCCTGTGTTCGCGAGGCACTGCAGCCGTAATTGCTACGCCGACGAGCACTACCTGCCCACGTTCCTGGGCATC
CGCCACCCGTCGCGCGTCACCAACCGGAGCGTGACGTGGGTCGACTGGTCCCACGGGGGCCCGCACCCGGCGAGGTTCAC
GAGGATGGAGGTCACGCCGGACTTCCTCCGGTGGCTTAGGGCCGGGGCCGGGACTACGTGNGACTACAATGGCGCCACCA
CGACGGTCTGCTTCCTGTTCGCGAGGAAGTTCCTNCCCAACTCGCTCACCAGGTTCCTCAGATTCGCTCCAAAGGTCATG
GGCTTTGGATGATGATGTGCAGCGAACGTTTTAATATTTAGCTAGGATATACAACTTTTCACATTCTTTGGTTTGTTTTA
TTCGCCTATTCCACAGACCCAACGTATACATGTACGTAAATTTCATTTTCCTTTTCTTTCTTCCTGATTTCATTATGTAA
AGACCAAATGAATGTAAAGAGCACAAGGAACTATATTTTTTATACTAACCACACATGGAATATAGAGTTTATTACACGCC
CTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis