Browse Element(s) Details


Os.8892.1.S1_at

Description gb:AK066665.1
DB_XREF= gi:32976683
TID=Os.8892.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8892 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013073O11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013073O11, full insert sequence.
FL= gb:AK066665.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4282011/11LIM domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42780OsAffx.25501.1.S1_x_at11/113+23781927..23787061IBR domain containing protein, expressed
LOC_Os03g42780OsAffx.25501.1.S1_at11/113+23781927..23787061IBR domain containing protein, expressed
LOC_Os03g42780Os.7529.1.S1_at1/113+23781927..23787061IBR domain containing protein, expressed
LOC_Os03g42790Os.50106.1.S1_at11/113+23790357..23793881IBR domain containing protein, expressed
LOC_Os03g42810OsAffx.13312.1.S1_s_at11/113+23803324..23806384Type I inositol-1,4,5-trisphosphate 5-phosphatase 11, putative, expressed
LOC_Os03g42820Os.8892.1.S1_at11/113+23809481..23816235LIM domain-containing protein, putative, expressed
LOC_Os03g42830Os.5343.1.S1_at10/113+23824483..23830601MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8892.1.S1_at--133--9571Chr03:23815662..23815686 (25 bp)
TCTTCAGCACCCTCATCCAAAAAGG
LOC_Os03g42820
Os.8892.1.S1_at--222--2891Chr03:23815683..23815707 (25 bp)
AAGGGTGTACAGACGGACTTCGAGA
LOC_Os03g42820
Os.8892.1.S1_at--927--8051Chr03:23815716..23815740 (25 bp)
GGAGAGTTCTTCAAGCACCAGATTG
LOC_Os03g42820
Os.8892.1.S1_at--891--6591Chr03:23815736..23815760 (25 bp)
GATTGAAACAGACCCTTCTGATGTA
LOC_Os03g42820
Os.8892.1.S1_at--203--2951Chr03:23815788..23815812 (25 bp)
AAGGCCGTTGAACGCTATGGCTTGA
LOC_Os03g42820
Os.8892.1.S1_at--994--6791Chr03:23815845..23815869 (25 bp)
GTTTTCCCGTGTTGAAGTCACAAAT
LOC_Os03g42820
Os.8892.1.S1_at--269--4871Chr03:23815902..23815926 (25 bp)
GTTCAAGTTAGACATGCCAAAAGGG
LOC_Os03g42820
Os.8892.1.S1_at--147--3591Chr03:23816013..23816037 (25 bp)
CTTGTCTAAATTATCGGTTTGCTGC
LOC_Os03g42820
Os.8892.1.S1_at--444--7872Chr06:17381470..17381489 (20 bp)
GGTTTGCTGCAATATTAGTTGGCTA
NONE
Os.8892.1.S1_at--1108--10831Chr03:23816102..23816126 (25 bp)
TTGGGCCTAGATGTCAAACACTTAG
LOC_Os03g42820
Os.8892.1.S1_at--188--2271Chr03:23816136..23816160 (25 bp)
AAATCATTCGCTATCGTTGTTGTTT
LOC_Os03g42820
Target Sequence 
TCTTCAGCACCCTCATCCAAAAAGGGTGTACAGACGGACTTCGAGAAGAAACTTGGAGAGTTCTTCAAGCACCAGATTGA
AACAGACCCTTCTGATGTATATGGAGATGGTTTTCGAGATGGCATTAAGGCCGTTGAACGCTATGGCTTGAGAAAAACTC
TTGATCATATGAAGCTTACAGGGGTTTTCCCGTGTTGAAGTCACAAATTTAGAGTATGAAGAATACATTGAGGAATTTTG
GTTCAAGTTAGACATGCCAAAAGGGTATATATGCTGTTAACATTAACTGAGCAATAGAATAGACGAGAAACAATGATTTT
GTTTTAGTAAATTTCAGAAAGTTACAACTATCTTGTCTAAATTATCGGTTTGCTGCAATATTAGTTGGCTATTTCAGAAA
ACTACAGCAGTAGTTGATTTTATCAGAAAACTGTTANACTTTGGGCCTAGATGTCAAACACTTAGTTTCTGATAAAATCA
TTCGCTATCGTTGTTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8892.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis