Browse Element(s) Details


Os.8970.1.S1_at

Description gb:AK101614.1
DB_XREF= gi:32986823
TID=Os.8970.1
CNT=30
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.8970 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033052E24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033052E24, full insert sequence.
FL= gb:AK101614.1 gb:AK060783.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4180011/11VTC2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41750OsAffx.13041.2.A1_at10/1112+25833488..25836300transposon protein, putative, unclassified
LOC_Os12g41750Os.54015.1.S1_at1/1112+25833488..25836300transposon protein, putative, unclassified
LOC_Os12g41760Os.25093.1.A1_x_at4/1112+25839963..25841948expressed protein
LOC_Os12g41760OsAffx.20082.1.S1_at1/1112+25839963..25841948expressed protein
LOC_Os12g41770OsAffx.32143.1.S1_at11/1112+25844359..25844760hypothetical protein
LOC_Os12g41780Os.33273.1.S1_at11/1112+25849499..25852311glycosyl transferase family 17 protein, putative, expressed
LOC_Os12g41790OsAffx.32144.1.S1_at11/1112+25852605..25853637Gamma-thionins family protein
LOC_Os12g41800Os.8970.1.S1_at11/1112+25855260..25859382VTC2, putative, expressed
LOC_Os12g41810Os.52966.1.S1_at11/1112+25860719..25864435WPP domain associated protein, putative, expressed
LOC_Os12g41820Os.11924.1.S1_at10/1112+25867850..25873944DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os12g41830OsAffx.7857.1.S1_at11/1112+25879339..25881031modification methylase, HemK family protein, expressed
LOC_Os12g41840OsAffx.32145.1.S1_at11/1112+25882716..25884226preprotein translocase, SecY subunit containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0010193biological_processresponse to ozone
GO:0019853biological_processL-ascorbic acid biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8970.1.S1_at--527--4231Chr12:25856009..25856033 (25 bp)
CCGTTGCCAGTGGAGTCTGCATCAA
LOC_Os12g41800
Os.8970.1.S1_at--388--9011Chr12:25855980..25856004 (25 bp)
TGCAATTTACCACGGCAAAGCCACA
LOC_Os12g41800
Os.8970.1.S1_at--609--2091Chr12:25855958..25855982 (25 bp)
ACATCAGCCGTTCACCTGTATGAAA
LOC_Os12g41800
Os.8970.1.S1_at--204--8991Chr12:25855918..25855942 (25 bp)
TGAAGGCTCTTGTGTTAACTGGCAA
LOC_Os12g41800
Os.8970.1.S1_at--1036--2471Chr12:25855886..25855910 (25 bp)
AACACGCTTGCCAATTTTGTCAGTG
LOC_Os12g41800
Os.8970.1.S1_at--132--371Chr12:25855837..25855861 (25 bp)
ATAATACTGCGTACAGCCTGCTGAT
LOC_Os12g41800
Os.8970.1.S1_at--806--1651Chr12:25855823..25855847 (25 bp)
AGCCTGCTGATCTCCAACAATGGCA
LOC_Os12g41800
Os.8970.1.S1_at--1039--7871Chr12:25855795..25855818 (24 bp)
GGTTTTCTTGTTTCCACAGGTGAAG
LOC_Os12g41800
Os.8970.1.S1_at--612--7331Chr12:25855640..25855664 (25 bp)
GTGCAGTGGCTACTTCATTTATCGC
LOC_Os12g41800
Os.8970.1.S1_at--990--2951Chr12:25855568..25855592 (25 bp)
AATGGCGTCAGTCACACTCCAAGAT
LOC_Os12g41800
Os.8970.1.S1_at--55--3231Chr12:25855549..25855573 (25 bp)
CAAGATGGCGCATTCGAGAACCTGA
LOC_Os12g41800
Target Sequence 
CCGTTGCCAGTGGAGTCTGCATCAACTGTTGCAATTTACCACGGCAAAGCCACATCAGCCGTTCACCTGTATGAAATAAT
TGATTATCCTATGAAGGCTCTTGTGTTAACTGGCAAGGACGTAAACACGCTTGCCAATTTTGTCAGTGAAGTATCTTTAA
CTCTGCATGACAATAATACTGCGTACAGCCTGCTGATCTCCAACAATGGCACAAAGGTTTTCTTGTTTCCACAGGTGAAG
AATCTGGCTACTGGATGTTNTCTTTCTGCCTGGGAGTGCAGTGGCTACTTCATTTATCGCGCCAAGTACGATTTNGACAG
AGCTTNTGAGAATGAAATTTCCAACAGAATGGCGTCAGTCACACTCCAAGATGGCGCATTCGAGAACCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8970.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis