Browse Element(s) Details


OsAffx.32145.1.S1_at

Description tigr:9640.m04104
TID=OsAffx.32145.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=preprotein translocase, SecY subunit, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4184011/11preprotein translocase, SecY subunit containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41800Os.8970.1.S1_at11/1112+25855260..25859382VTC2, putative, expressed
LOC_Os12g41810Os.52966.1.S1_at11/1112+25860719..25864435WPP domain associated protein, putative, expressed
LOC_Os12g41820Os.11924.1.S1_at10/1112+25867850..25873944DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os12g41830OsAffx.7857.1.S1_at11/1112+25879339..25881031modification methylase, HemK family protein, expressed
LOC_Os12g41840OsAffx.32145.1.S1_at11/1112+25882716..25884226preprotein translocase, SecY subunit containing protein
LOC_Os12g41850OsAffx.32146.2.S1_at10/1112+25884957..25886877expressed protein
LOC_Os12g41860Os.32984.1.S1_at11/1112+25887035..25893743class III HD-Zip protein 4, putative, expressed
LOC_Os12g41860Os.56258.1.S1_at1/1112+25887035..25893743class III HD-Zip protein 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009306biological_processprotein secretion
GO:0016020cellular_componentmembrane
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32145.1.S1_at--260--1871Chr12:25883282..25883306 (25 bp)
ACGAGTTCGTCCCAATCAAGCTGCT
LOC_Os12g41840
OsAffx.32145.1.S1_at--488--4771Chr12:25883052..25883076 (25 bp)
GCTGCTGGTGGATCCCGGCCTGATC
LOC_Os12g41840
OsAffx.32145.1.S1_at--1005--8851Chr12:25883032..25883056 (25 bp)
TGATCCACGAGCTGCTGATCCATAG
LOC_Os12g41840
OsAffx.32145.1.S1_at--75--3871Chr12:25883018..25883042 (25 bp)
CTGATCCATAGCGTGTTCGTCGTCG
LOC_Os12g41840
OsAffx.32145.1.S1_at--679--8831Chr12:25882921..25882945 (25 bp)
TGATCGGAACGGGATACTTCGTGTG
LOC_Os12g41840
OsAffx.32145.1.S1_at--314--9891Chr12:25882907..25882931 (25 bp)
TACTTCGTGTGGGACGAGACTAGCC
LOC_Os12g41840
OsAffx.32145.1.S1_at--787--1871Chr12:25882894..25882918 (25 bp)
ACGAGACTAGCCGTCGGATCGACCG
LOC_Os12g41840
OsAffx.32145.1.S1_at--597--9991Chr12:25882887..25882911 (25 bp)
TAGCCGTCGGATCGACCGTGTCATC
LOC_Os12g41840
OsAffx.32145.1.S1_at--74--5411Chr12:25882787..25882811 (25 bp)
GAAGCTGGTCCTGAACTTTTGTTCG
LOC_Os12g41840
OsAffx.32145.1.S1_at--622--3671Chr12:25882772..25882796 (25 bp)
CTTTTGTTCGCAGTTTTAGTCATCA
LOC_Os12g41840
OsAffx.32145.1.S1_at--351--10451Chr12:25882757..25882781 (25 bp)
TTAGTCATCAAGAACCTGGCCGAAA
LOC_Os12g41840
Target Sequence 
ACGAGTTCGTCCCAATCAAGCTGCTCTACACCTCCGCGATGCCCATCATGCTGCACGCCTCCGCCCTCCACCTCCACAGC
AGCGGCGGCGGCGGCGGCGGTTTCGTCGTCAACCTGCTCGGCAGGTGGAAGGACGCCGGCGGCGGCGCCGCCTACCCGGT
GGGCGGCCTCGTCTACTACGTCACGCCGCCGTCGAAGCTGCTGGTGGATCCCGGCCTGATCCACGAGCTGCTGATCCATA
GCGTGTTCGTCGTCGCGTCGTGCACGCTCCTCTCCATGGCCTGGGCCGAGGCGTCGCGCTCGTCGGCGAGGGAGTTCAGG
ACGCGGGTGATCGGAACGGGATACTTCGTGTGGGACGAGACTAGCCGTCGGATCGACCGTGTCATCGCGGCGGCCGCCGC
CGTCGGTGGCTTCGCCGTCGGTGGGCTCGCCGTCTACGCCGGCGCCGTTGGAGCTATTGGAGAAGCTGGTCCTGAACTTT
TGTTCGCAGTTTTAGTCATCAAGAACCTGGCCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32145.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis