Browse Element(s) Details


OsAffx.32146.2.S1_at

Description tigr:9640.m04105
TID=OsAffx.32146.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4185010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41810Os.52966.1.S1_at11/1112+25860719..25864435WPP domain associated protein, putative, expressed
LOC_Os12g41820Os.11924.1.S1_at10/1112+25867850..25873944DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os12g41830OsAffx.7857.1.S1_at11/1112+25879339..25881031modification methylase, HemK family protein, expressed
LOC_Os12g41840OsAffx.32145.1.S1_at11/1112+25882716..25884226preprotein translocase, SecY subunit containing protein
LOC_Os12g41850OsAffx.32146.2.S1_at10/1112+25884957..25886877expressed protein
LOC_Os12g41860Os.32984.1.S1_at11/1112+25887035..25893743class III HD-Zip protein 4, putative, expressed
LOC_Os12g41860Os.56258.1.S1_at1/1112+25887035..25893743class III HD-Zip protein 4, putative, expressed
LOC_Os12g41870Os.14919.1.S1_at7/1112+25910913..25916892transposon protein, putative, Mutator sub-class
LOC_Os12g41870Os.56216.1.S1_at1/1112+25910913..25916892transposon protein, putative, Mutator sub-class
LOC_Os12g41870OsAffx.29313.1.S1_at1/1112+25910913..25916892transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32146.2.S1_at--326--4991NONE
GCATGACAATCATCGAGATCGCCGG
NONE
OsAffx.32146.2.S1_at--236--2791Chr12:25886627..25886651 (25 bp)
AAGAGATCGCTCGACTTGAGGCCCG
LOC_Os12g41850
OsAffx.32146.2.S1_at--1123--8611Chr12:25886688..25886712 (25 bp)
TGGTGGATCGACAGACATCCGCGCA
LOC_Os12g41850
OsAffx.32146.2.S1_at--507--1411Chr12:25886700..25886724 (25 bp)
AGACATCCGCGCACGTGCGTGGGCC
LOC_Os12g41850
OsAffx.32146.2.S1_at--1070--6051Chr12:25886736..25886760 (25 bp)
GAGTTGGGCTGCAACTGGGCCCAAA
LOC_Os12g41850
OsAffx.32146.2.S1_at--291--3891Chr12:25886750..25886774 (25 bp)
CTGGGCCCAAACAAGACACGATTCT
LOC_Os12g41850
OsAffx.32146.2.S1_at--917--5631Chr12:25886764..25886788 (25 bp)
GACACGATTCTATTCGTGGCCGAGA
LOC_Os12g41850
OsAffx.32146.2.S1_at--368--111Chr12:25886775..25886799 (25 bp)
ATTCGTGGCCGAGATCAGTGAGCAG
LOC_Os12g41850
OsAffx.32146.2.S1_at--294--7391Chr12:25886792..25886816 (25 bp)
GTGAGCAGGACGTAGCACTGAGAAA
LOC_Os12g41850
OsAffx.32146.2.S1_at--411--1411Chr12:25886812..25886836 (25 bp)
AGAAAAGTCTATTTGGGCTCCCTCA
LOC_Os12g41850
OsAffx.32146.2.S1_at--616--10252Chr12:25886823..25886847 (25 bp)
TTTGGGCTCCCTCAACTATGTACCA
LOC_Os12g41850
Target Sequence 
GCATGACAATCATCGAGATCGCCGGAGAAGAGATCGCTCGACTTGAGGCCCGCGGCGTCGGCGTCAGCGCCGGCTGCGAG
GCAGGAGGTGGTGGATCGACAGACATCCGCGCACGTGCGTGGGCCGGTGATAGGCTGAGTTGGGCTGCAACTGGGCCCAA
ACAAGACACGATTCTATTCGTGGCCGAGATCAGTGAGCAGGACGTAGCACTGAGAAAAGTCTATTTGGGCTCCCTCAACT
ATGTACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32146.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis