Browse Element(s) Details


Os.32984.1.S1_at

Description gb:AK102183.1
DB_XREF= gi:32987392
TID=Os.32984.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32984 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033086M14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086M14, full insert sequence.
FL= gb:AK102183.1 gb:AK058416.1 gb:AK058915.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4186011/11class III HD-Zip protein 4, putative, expressed
LOC_Os03g243391/11PWWP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41810Os.52966.1.S1_at11/1112+25860719..25864435WPP domain associated protein, putative, expressed
LOC_Os12g41820Os.11924.1.S1_at10/1112+25867850..25873944DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os12g41830OsAffx.7857.1.S1_at11/1112+25879339..25881031modification methylase, HemK family protein, expressed
LOC_Os12g41840OsAffx.32145.1.S1_at11/1112+25882716..25884226preprotein translocase, SecY subunit containing protein
LOC_Os12g41850OsAffx.32146.2.S1_at10/1112+25884957..25886877expressed protein
LOC_Os12g41860Os.32984.1.S1_at11/1112+25887035..25893743class III HD-Zip protein 4, putative, expressed
LOC_Os12g41860Os.56258.1.S1_at1/1112+25887035..25893743class III HD-Zip protein 4, putative, expressed
LOC_Os12g41870Os.14919.1.S1_at7/1112+25910913..25916892transposon protein, putative, Mutator sub-class
LOC_Os12g41870Os.56216.1.S1_at1/1112+25910913..25916892transposon protein, putative, Mutator sub-class
LOC_Os12g41870OsAffx.29313.1.S1_at1/1112+25910913..25916892transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009855biological_processdetermination of bilateral symmetry
GO:0009887biological_processorgan morphogenesis
GO:0009910biological_processnegative regulation of flower development
GO:0009943biological_processadaxial/abaxial axis specification
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0009955biological_processadaxial/abaxial pattern formation
GO:0009956biological_processradial pattern formation
GO:0009965biological_processleaf morphogenesis
GO:0010014biological_processmeristem initiation
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0010072biological_processprimary shoot apical meristem specification
GO:0010073biological_processmeristem maintenance
GO:0010075biological_processregulation of meristem size
GO:0010087biological_processvascular tissue development (sensu Tracheophyta)
GO:0030154biological_processcell differentiation
GO:0048497biological_processmaintenance of floral organ identity
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32984.1.S1_at--466--1051Chr12:25887468..25887492 (25 bp)
AGGGTTTCACCTATCTCCCTGGAGG
LOC_Os12g41860
Os.32984.1.S1_at--80--8191Chr12:25887390..25887414 (25 bp)
GGAAGGTTCTTAGCGACGACGACGC
LOC_Os12g41860
Os.32984.1.S1_at--563--611Chr12:25887346..25887370 (25 bp)
ATGCTCGTCAACTGGACCTTCATGT
LOC_Os12g41860
Os.32984.1.S1_at--430--3671Chr12:25887285..25887309 (25 bp)
CTTTTGCTTTTGTGCCATTGTGGCA
LOC_Os12g41860
Os.32984.1.S1_at--864--2331Chr12:25887252..25887276 (25 bp)
AAAGACCTGAATACCACCACCGTAT
LOC_Os12g41860
Os.32984.1.S1_at--680--612Chr12:25887215..25887239 (25 bp)
ATGCGTCCATACATGCATGGTGCTT
LOC_Os12g41860
Os.32984.1.S1_at--744--811Chr12:25887199..25887223 (25 bp)
ATGGTGCTTGCTTTATCCTAGCTAG
LOC_Os12g41860
Os.32984.1.S1_at--69--9091Chr12:25887174..25887198 (25 bp)
TGCTAGCACCTGTGTGTATGGTCTC
LOC_Os12g41860
Os.32984.1.S1_at--329--6931Chr12:25887159..25887183 (25 bp)
GTATGGTCTCTCCATGTTTGAAGCT
LOC_Os12g41860
Os.32984.1.S1_at--1131--10351Chr12:25887109..25887133 (25 bp)
TTTTTCTGCTGCTGTGTGGATGAAC
LOC_Os12g41860
Os.32984.1.S1_at--723--6831Chr12:25887082..25887106 (25 bp)
GTTTCAGGACCTATGTATCTCTATC
LOC_Os12g41860
Target Sequence 
AGGGTTTCACCTATCTCCCTGGAGGCGTCTGCAAGTCGAGCATGGGGCGGCAGGCATCGTATGAGCAGGCGGTGGCGTGG
AAGGTTCTTAGCGACGACGACGCGCCGCACTGCCTCGCCTTCATGCTCGTCAACTGGACCTTCATGTGATCCACCATCCA
TGGTTTCCAGCTTCCAGCTAGTGCTTTTGCTTTTGTGCCATTGTGGCAAACTGAACAAAGACCTGAATACCACCACCGTA
TTGTATTAAACATATGCGTCCATACATGCATGGTGCTTGCTTTATCCTAGCTAGTGCTAGCACCTGTGTGTATGGTCTCT
CCATGTTTGAAGCTTAAAATTTTAGAACCCTGGTTTTTTTTTTTTTCTGCTGCTGTGTGGATGAACAAGTTTCAGGACCT
ATGTATCTCTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32984.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis