Browse Element(s) Details


Os.9007.1.S1_s_at

Description gb:AU093216
DB_XREF= gi:8528401
DB_XREF=AU093216
CLONE=C2759
TID=Os.9007.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.9007 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2637011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26330NANA1+14918190..14918714retrotransposon protein, putative, unclassified
LOC_Os01g26340OsAffx.2093.1.S1_at11/111+14924827..14925934Dirigent-like protein
LOC_Os01g26350OsAffx.23407.1.S1_at11/111+14930057..14931077hypothetical protein
LOC_Os01g26370Os.9007.1.S1_s_at11/111+14938206..14941824expressed protein
LOC_Os01g26370Os.27319.1.A1_at11/111+14938206..14941824expressed protein
LOC_Os01g26390Os.36236.1.S1_at11/111+14947054..14950788Protein kinase domain containing protein, expressed
LOC_Os01g26390Os.36236.2.S1_x_at11/111+14947054..14950788Protein kinase domain containing protein, expressed
LOC_Os01g26400NANA1+14965691..14967340retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9007.1.S1_s_at--998--9611Chr01:14938392..14938416 (25 bp)
TCATGAGTAGGCTCCTCCACTTCAC
LOC_Os01g26370
Os.9007.1.S1_s_at--74--4291Chr01:14939757..14939781 (25 bp)
CCTGCAGATCACCATGTTTGTACAA
LOC_Os01g26370
Os.9007.1.S1_s_at--173--9051Chr01:14939759..14939783 (25 bp)
TGCAGATCACCATGTTTGTACAATT
LOC_Os01g26370
Os.9007.1.S1_s_at--443--6851Chr01:14939772..14939796 (25 bp)
GTTTGTACAATTTATAGTTGGACTA
LOC_Os01g26370
Os.9007.1.S1_s_at--1107--6611Chr01:14939788..14939812 (25 bp)
GTTGGACTAAGAGAGTATTCTGGTA
LOC_Os01g26370
Os.9007.1.S1_s_at--405--1191Chr01:14939801..14939825 (25 bp)
AGTATTCTGGTAATTAACTTCTGGG
LOC_Os01g26370
Os.9007.1.S1_s_at--1030--9612Chr01:14941601..14941625 (25 bp)
TCATGCCAAGCCCTGTTGCTGTTTT
LOC_Os01g26370
Os.9007.1.S1_s_at--354--8811Chr01:14941614..14941638 (25 bp)
TGTTGCTGTTTTCCGTCCTATGTCC
LOC_Os01g26370
Os.9007.1.S1_s_at--921--3691Chr01:14941631..14941655 (25 bp)
CTATGTCCTGTCCTGAGGTTGTAGA
LOC_Os01g26370
Os.9007.1.S1_s_at--50--9811Chr01:14941708..14941732 (25 bp)
TAACTTTTTCGCACTTCAGAAATGG
LOC_Os01g26370
Os.9007.1.S1_s_at--423--3291Chr01:14941762..14941786 (25 bp)
CAAAGATTTGTGTCTCGATATGTAA
LOC_Os01g26370
Target Sequence 
TCATGAGTAGGCTCCTCCACTTCACCACCGTCCACAGTCTCGTTCCCGNTNCACGNGCGCGCCGNCGAGTAGGCTTATGA
ACTAAATGACGAGGTGAATGCACGGATAAGNCCTGCAGATCACCATGTTTGTACAATTTATAGTTGGACTAAGAGAGTAT
TCTGGTAATTAACTTCTGGGGCAAGTAATCTGNCCTGNAGATCATCGTATTGTTGGAATTTTTTTTTTGGGGGGCTTACC
AGGTTCTCAGGGTGAAGTGCTTTATGAGCTTCTTCGAGGAATGGGAGGTCAGAAAGAGGAATTTGACATTGGCATCATGC
CAAGCCCTGTTGCTGTTTTCCGTCCTATGTCCTGTCCTGAGGTTGTAGAATGATAGTCGAGATACATGAGGATATCTCAA
GATTTACTGACTAAACTTAAATAACTTTTTCGCACTTCAGAAATGGTATATTACTTCATAGTATAAATTTTTATACAAAG
ATTTGTGTCTCGATATGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9007.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis