Browse Element(s) Details


Os.9105.1.S1_at

Description gb:AK121935.1
DB_XREF= gi:37991558
TID=Os.9105.1
CNT=22
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.9105 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-123-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107A08, full insert sequence.
FL= gb:AK121935.1 gb:AK105396.1 gb:AK121679.1 gb:AK102869.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3368011/11Glycosyl hydrolase family 1 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33630Os.36979.1.S1_x_at11/119+19862703..19865816Protein kinase domain containing protein, expressed
LOC_Os09g33630Os.16896.1.S1_at11/119+19862703..19865816Protein kinase domain containing protein, expressed
LOC_Os09g33630OsAffx.30126.2.S1_x_at2/119+19862703..19865816Protein kinase domain containing protein, expressed
LOC_Os09g33630OsAffx.30126.2.S1_at1/119+19862703..19865816Protein kinase domain containing protein, expressed
LOC_Os09g33640OsAffx.30127.1.S1_at2/119+19867717..19868313expressed protein
LOC_Os09g33650OsAffx.30127.1.S1_at11/119+19874298..19875147expressed protein
LOC_Os09g33660NANA9+19876986..19877242hypothetical protein
LOC_Os09g33670Os.50184.1.S1_at11/119+19877907..19881653Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g33670Os.19059.1.S1_at11/119+19877907..19881653Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g33680Os.9105.1.S1_at11/119+19882169..19887645Glycosyl hydrolase family 1 protein, expressed
LOC_Os09g33690Os.17433.1.S1_at11/119+19894746..19903996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g33690Os.46223.1.S1_s_at11/119+19894746..19903996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g33690OsAffx.15220.2.S1_s_at8/119+19894746..19903996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g33690OsAffx.15220.1.S1_s_at7/119+19894746..19903996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g33700NANA9+19907320..19907562expressed protein
LOC_Os09g33710Os.52315.1.S1_at11/119+19908250..19914000Glycosyl hydrolase family 1 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9105.1.S1_at--5--5771Chr09:19883042..19883066 (25 bp)
GACGATTTCAGGTCGCAATATCTGC
LOC_Os09g33680
Os.9105.1.S1_at--848--5011Chr09:19883019..19883043 (25 bp)
GCAGGATTACATCGAGGCCACACTT
LOC_Os09g33680
Os.9105.1.S1_at--720--10431Chr09:19882742..19883020 (25 bp)
TTCAATCCATCAGGAACGGGTCGAA
LOC_Os09g33680
Os.9105.1.S1_at--605--2551Chr09:19882728..19882752 (25 bp)
AACGGGTCGAACGTGCAGGGCTACT
LOC_Os09g33680
Os.9105.1.S1_at--1046--7391Chr09:19882683..19882707 (25 bp)
GTGTTCGAGTACCTGTTCGGCTACC
LOC_Os09g33680
Os.9105.1.S1_at--1155--8071Chr09:19882613..19882637 (25 bp)
GGACCAGGTACCAGAGGCACTCGGC
LOC_Os09g33680
Os.9105.1.S1_at--243--9911Chr09:19882515..19882539 (25 bp)
TACTCCCAGTGATCAAGGTTCTTCT
LOC_Os09g33680
Os.9105.1.S1_at--476--3351Chr09:19882484..19882508 (25 bp)
CACGCTTTCATCTCGCGAAGAACAG
LOC_Os09g33680
Os.9105.1.S1_at--271--5491Chr09:19882465..19882489 (25 bp)
GAACAGGACAGGACGGGACAATAAA
LOC_Os09g33680
Os.9105.1.S1_at--611--1471Chr09:19882373..19882397 (25 bp)
AGAATGAATGGTCTCTCTTCTTCCC
LOC_Os09g33680
Os.9105.1.S1_at--624--1691Chr09:19882322..19882346 (25 bp)
ACCAATGATGGGTCAATGTCAGTCA
LOC_Os09g33680
Target Sequence 
GACGATTTCAGGTCGCAATATCTGCAGGATTACATCGAGGCCACACTTCAATCCATCAGGAACGGGTCGAACGTGCAGGG
CTACTTCGTGTGGTCGTTCCTGGACGTGTTCGAGTACCTGTTCGGCTACCGCCTCCGCTTCGGCCTCTACGGCGTCGACT
TCGCCTCGCCGGAGAGGACCAGGTACCAGAGGCACTCGGCGCGGTGGTACGCCGGCTTCCTCCGCGGCGGCGAGCTCCGG
CCGGCGGCGGCGGCGCTGGCCGGCGGCGGAGCCTACTCCCAGTGATCAAGGTTCTTCTTCCTCGCACGCTTTCATCTCGC
GAAGAACAGGACAGGACGGGACAATAAAATTTACCTGGATAGATACAGAAGAATTATACAGTTCATATGGAAGTTGATCT
TTTGAATAGGGTCTTAGAATGAATGGTCTCTCTTCTTCCCCTGGTTTTTGGTTCTTCTGTTTACAGACCAATGATGGGTC
AATGTCAGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9105.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis