Browse Element(s) Details


Os.9193.1.S1_at

Description gb:L36313.1
DB_XREF= gi:538427
TID=Os.9193.1
CNT=34
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9193 (NCBI UniGene Cluster)
DEF=Oryza sativa ribosomal protein S16 mRNA, complete cds.
PROD=ribosomal protein S16
FL= gb:L36313.1 gb:AK059550.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0340011/1140S ribosomal protein S16, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03360OsAffx.30795.2.S1_at11/1111+1260957..1266500hypothetical protein
LOC_Os11g03360OsAffx.23640.3.S1_x_at6/1111+1260957..1266500hypothetical protein
LOC_Os11g03360OsAffx.30795.1.S1_x_at5/1111+1260957..1266500hypothetical protein
LOC_Os11g03360OsAffx.30795.3.S1_at4/1111+1260957..1266500hypothetical protein
LOC_Os11g03360OsAffx.23640.1.S1_x_at1/1111+1260957..1266500hypothetical protein
LOC_Os11g03370Os.35343.1.A1_at11/1111+1268315..1270180NAC-domain containing protein 21/22, putative, expressed
LOC_Os11g03380Os.11848.1.S1_at11/1111+1273459..1278085expressed protein
LOC_Os11g03380OsAffx.7454.1.S1_at1/1111+1273459..1278085expressed protein
LOC_Os11g03390Os.8564.1.S1_at11/1111+1279055..1280691FHA domain containing protein, expressed
LOC_Os11g03390Os.10524.1.S1_x_at2/1111+1279055..1280691FHA domain containing protein, expressed
LOC_Os11g03400Os.9193.1.S1_s_at11/1111+1284453..128525240S ribosomal protein S16, putative, expressed
LOC_Os11g03400Os.9193.1.S1_at11/1111+1284453..128525240S ribosomal protein S16, putative, expressed
LOC_Os11g03410Os.15794.1.S1_at5/1111+1287862..1291333secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os11g03410Os.35323.1.S1_at1/1111+1287862..1291333secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os11g03420Os.16784.1.S1_at11/1111+1297251..1297987ZF-HD protein dimerisation region containing protein, expressed
LOC_Os11g03430Os.54171.1.S1_at11/1111+1305317..1307674CDC45-like protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9193.1.S1_at--24--9111Chr11:1284973..1284997 (25 bp)
TGCTCGCGGGGAGGTCACGCTTCAA
LOC_Os11g03400
Os.9193.1.S1_at--41--4871Chr11:1284799..1284823 (25 bp)
GCTATGACCGCACTCTACTCGTCGC
LOC_Os11g03400
Os.9193.1.S1_at--256--3211Chr11:1284652..1284676 (25 bp)
CAATGGAGCTATTTTGCTGGTTCTA
LOC_Os11g03400
Os.9193.1.S1_at--1149--10571Chr11:1284632..1284656 (25 bp)
TTCTACATCTAGCTACTGCTTTACT
LOC_Os11g03400
Os.9193.1.S1_at--815--2071Chr11:1284628..1284652 (25 bp)
ACATCTAGCTACTGCTTTACTTCAA
LOC_Os11g03400
Os.9193.1.S1_at--479--1551Chr11:1284622..1284646 (25 bp)
AGCTACTGCTTTACTTCAAGTTTAG
LOC_Os11g03400
Os.9193.1.S1_at--585--1951Chr11:1284618..1284642 (25 bp)
ACTGCTTTACTTCAAGTTTAGTCTT
LOC_Os11g03400
Os.9193.1.S1_at--62--4831Chr11:1284588..1284612 (25 bp)
GCTTAGTCCCGAACCTTTTTGACAT
LOC_Os11g03400
Os.9193.1.S1_at--900--10051Chr11:1284585..1284609 (25 bp)
TAGTCCCGAACCTTTTTGACATTGT
LOC_Os11g03400
Os.9193.1.S1_at--713--5571Chr11:1284560..1284584 (25 bp)
GAAATGGATGCGACTGAGGCGTTTA
LOC_Os11g03400
Os.9193.1.S1_at--948--7971Chr11:1284555..1284579 (25 bp)
GGATGCGACTGAGGCGTTTAAGACT
LOC_Os11g03400
Target Sequence 
TGCTCGCGGGGAGGTCACGCTTCAAGGACATCGACATGAGGATCCGCGTCCGCGGCGGAGGGAAGACGTCGCAGATCTAC
GCGATCCGCCAGGCCATCGCCAAGGCCCTCGTCGCCTACTACCAGAAGTACGTCGACGAGGCNTCCAAGAAGGAGGTNAA
GGACATCTTTGCCCGCTATGACCGCACTCTACTCGTCGCCGACCCCAGGCGCTGCGAGCCCAAGAAGTTCGGTGGTCGCG
GCGCCCGCGCCAGGTTCCAGAAGTCGTACCGTTGAGCGCTCGCCGGATCGATTCGGAGCGGTGTTCTCTTTTCCACCCTA
TCAATGGAGCTATTTTGCTGGTTCTACATCTAGCTACTGCTTTACTTCAAGTTTAGTCTTTTTAAGCTTAGTCCCGAACC
TTTTTGACATTGTGAAATGGATGCGACTGAGGCGTTTAAGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9193.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis