Browse Element(s) Details


Os.9250.1.S1_at

Description gb:AK103264.1
DB_XREF= gi:32988473
TID=Os.9250.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.9250 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033124F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033124F12, full insert sequence.
FL= gb:AK103264.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6015011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60110Os.5675.1.S1_at11/113+34125371..34129755KH domain-containing protein, putative, expressed
LOC_Os03g60120Os.14299.1.S1_at11/113+34131362..34132584AP2 domain containing protein, expressed
LOC_Os03g60130Os.37576.1.S1_at11/113+34134060..34136924transcription elongation factor S-II family protein, expressed
LOC_Os03g60140OsAffx.3651.1.S1_at9/113+34138016..34140761hypothetical protein
LOC_Os03g60150Os.9250.1.S1_at11/113+34141397..34145205Protein kinase domain containing protein, expressed
LOC_Os03g60170Os.56162.1.A1_x_at11/113+34158881..34161617expressed protein
LOC_Os03g60170Os.56162.1.A1_at11/113+34158881..34161617expressed protein
LOC_Os03g60170OsAffx.13557.1.S1_x_at5/113+34158881..34161617expressed protein
LOC_Os03g60180OsAffx.6045.1.S1_s_at11/113+34166462..34171067expressed protein
LOC_Os03g60180Os.54092.1.S1_at11/113+34166462..34171067expressed protein
LOC_Os03g60180OsAffx.6045.1.S1_at4/113+34166462..34171067expressed protein
LOC_Os03g60180OsAffx.13557.1.S1_x_at1/113+34166462..34171067expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004713molecular_functionprotein-tyrosine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9250.1.S1_at--26--651Chr03:34141974..34141998 (25 bp)
ATGCACTGAGCTGATATTTTCCCTC
LOC_Os03g60150
Os.9250.1.S1_at--572--231Chr03:34141961..34141985 (25 bp)
ATATTTTCCCTCTCGTCTCTAATGA
LOC_Os03g60150
Os.9250.1.S1_at--198--971Chr03:34141911..34141935 (25 bp)
AGGAGACCCCTCAGGAGCTTGTGTT
LOC_Os03g60150
Os.9250.1.S1_at--207--5931Chr03:34141897..34141921 (25 bp)
GAGCTTGTGTTCATTGTGCAGTCAT
LOC_Os03g60150
Os.9250.1.S1_at--1026--1151Chr03:34141878..34141902 (25 bp)
AGTCATGCTGGGTCGAGGATCCTGC
LOC_Os03g60150
Os.9250.1.S1_at--898--991Chr03:34141863..34141887 (25 bp)
AGGATCCTGCCATGAGGCCTAGCTT
LOC_Os03g60150
Os.9250.1.S1_at--876--1631Chr03:34141745..34141769 (25 bp)
AGCGTCATCGCTGAATGGCAAGAAC
LOC_Os03g60150
Os.9250.1.S1_at--585--2751Chr03:34141726..34141750 (25 bp)
AAGAACTCTGCTGTCTCTTCTATCG
LOC_Os03g60150
Os.9250.1.S1_at--45--9571Chr03:34141711..34141735 (25 bp)
TCTTCTATCGTTTCTCGCGCGACAA
LOC_Os03g60150
Os.9250.1.S1_at--583--2351Chr03:34141622..34141646 (25 bp)
AAAGCTCTCGGAGGTCTCAGTCGTC
LOC_Os03g60150
Os.9250.1.S1_at--84--6331Chr03:34141550..34141574 (25 bp)
GATGCATGTCCTGAGACGGTTTCCC
LOC_Os03g60150
Target Sequence 
ATGCACTGAGCTGATATTTTCCCTCTCGTCTCTAATGACAGCAAGCGCGCCCACCCCTTCCTGAGGAGACCCCTCAGGAG
CTTGTGTTCATTGTGCAGTCATGCTGGGTCGAGGATCCTGCCATGAGGCCTAGCTTCAGCCAGATCATCCGCATGCTGGA
TGCTTTCCTCATGACAATACCTCCACCACCTCCTTCAGAATCAAACGAAGACGTGGAATCGGAAGAAACAGCGTCATCGC
TGAATGGCAAGAACTCTGCTGTCTCTTCTATCGTTTCTCGCGCGACAAGCAAGCTCTCGGTCGTCCGCCATCTCTTTGCC
TCAAAGAAGGCTGGGAATGGGAGGACATAAACAAAGCTCTCGGAGGTCTCAGTCGTCGTCCGCCATCTCTTCGCCTCAAG
AAGGCAGGCAATGGGAGGACATGTGATGCATGTCCTGAGACGGTTTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9250.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis