Browse Element(s) Details


Os.9261.1.A1_at

Description gb:AK062214.1
DB_XREF= gi:32972232
TID=Os.9261.1
CNT=88
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.9261 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013069L15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-047-A08, full insert sequence.
FL= gb:AK062214.1 gb:AK066594.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4164011/11Phosphoglycerate kinase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41580Os.27028.1.A1_at2/115+24263999..24270810Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os05g41590Os.11570.1.S1_s_at11/115+24274702..24277906Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os05g41590Os.11570.1.S1_at11/115+24274702..24277906Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os05g41590Os.35559.1.S1_at6/115+24274702..24277906Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os05g41599NANA5+24279361..24279781NA
LOC_Os05g41610Os.4160.1.S1_at11/115+24288010..24291479Glucan endo-1,3-beta-glucosidase GVI precursor, putative, expressed
LOC_Os05g41620Os.14205.1.S1_at11/115+24291803..24293628expressed protein
LOC_Os05g41630OsAffx.15060.1.S1_at11/115+24293707..24294697expressed protein
LOC_Os05g41640Os.9261.1.A1_at11/115+24295444..24298321Phosphoglycerate kinase, chloroplast precursor, putative, expressed
LOC_Os05g41650NANA5+24299227..24299556hypothetical protein
LOC_Os05g41660OsAffx.4591.1.S1_at11/115+24299974..24301290ICE-like protease p20 domain containing protein, expressed
LOC_Os05g41670Os.5532.1.S1_at11/115+24301696..24304131latex-abundant protein, putative, expressed
LOC_Os05g41680OsAffx.31069.1.S1_x_at1/115+24305904..24307684retrotransposon protein, putative, unclassified
LOC_Os05g41690Os.28943.1.S1_x_at3/115+24308459..24311668retrotransposon protein, putative, unclassified
LOC_Os05g41700NANA5+24312289..24317919retrotransposon protein, putative, unclassified
LOC_Os05g41710NANA5+24319344..24319802hypothetical protein
LOC_Os05g41720OsAffx.20387.1.S1_x_at2/115+24321533..24329285retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0004618molecular_functionphosphoglycerate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9261.1.A1_at--1008--10591Chr05:24296659..24296683 (25 bp)
TTCTGTTGCCATCTGACGTTATCAT
LOC_Os05g41640
Os.9261.1.A1_at--141--1211Chr05:24296626..24296650 (25 bp)
AGTTTGCTCCTGATGCTAACAGCCA
LOC_Os05g41640
Os.9261.1.A1_at--67--9831Chr05:24296471..24296634 (25 bp)
TAACAGCCAGGTTGTTCCAGCATCT
LOC_Os05g41640
Os.9261.1.A1_at--176--231Chr05:24296418..24296442 (25 bp)
ATATTGGTCCAGATTCAGTCGCGTC
LOC_Os05g41640
Os.9261.1.A1_at--707--9591Chr05:24296395..24296419 (25 bp)
TCATTCAGCTCTACCCTGGAAACAA
LOC_Os05g41640
Os.9261.1.A1_at--652--831Chr05:24296352..24296376 (25 bp)
ATGGACCTATGGGTGTCTTCGAATT
LOC_Os05g41640
Os.9261.1.A1_at--708--1451Chr05:24296184..24296208 (25 bp)
AGAAGTTGGCAGACCTTAGCGGCAA
LOC_Os05g41640
Os.9261.1.A1_at--452--991Chr05:24296138..24296162 (25 bp)
AGGAGGTGATTCTGTTGCCGCTGTT
LOC_Os05g41640
Os.9261.1.A1_at--811--5471Chr05:24296035..24296059 (25 bp)
GAACTTCCTGGAGTCATTGCACTTG
LOC_Os05g41640
Os.9261.1.A1_at--387--5411Chr05:24296008..24296032 (25 bp)
GAAGCTGTCACTGTGGCCGTATGAG
LOC_Os05g41640
Os.9261.1.A1_at--383--6671Chr05:24295968..24295992 (25 bp)
GTTGCATCTTCTTCATGTACCATTC
LOC_Os05g41640
Target Sequence 
TTCTGTTGCCATCTGACGTTATCATTGCTGATAAGTTTGCTCCTGATGCTAACAGCCAGGTTGTTCCAGCATCTGCTATT
CCTGATGGTTGGATGGGTCTGGATATTGGTCCAGATTCAGTCGCGTCATTCAGCTCTACCCTGGAAACAACACAGACAGT
CATTTGGAATGGACCTATGGGTGTCTTCGAATTTGACAAGTTTGCAGTAGGAACTGAGGCTATTGCAAAGAAGTTGGCAG
ACCTTAGCGGCAAGGGTGTTACAACCATTATTGGAGGAGGTGATTCTGTTGCCGCTGTTGAGAAGGTGGGAGTTGCAGAT
GTTATGAGCCACATTTCAACGGGAGGTGGTGCTAGCTTGGAGCTGTTGGAAGGAAAGGAACTTCCTGGAGTCATTGCACT
TGATGAAGCTGTCACTGTGGCCGTATGAGGCTAAGTTTCATTTTGTTGCATCTTCTTCATGTACCATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9261.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis