Browse Element(s) Details


Os.9318.1.S1_at

Description gb:AK109149.1
DB_XREF= gi:32994358
TID=Os.9318.1
CNT=31
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.9318 (NCBI UniGene Cluster)
UG_TITLE=Root-specific RCc3 mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-F07, full insert sequence.
FL= gb:AK109149.1 gb:L27208.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4431011/11Cortical cell delineating protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44250Os.54704.1.S1_at10/112+26773435..26774394expressed protein
LOC_Os02g44260OsAffx.12490.1.S1_at10/112+26775727..26776764zinc-binding protein, putative
LOC_Os02g44260OsAffx.21876.1.S1_at1/112+26775727..26776764zinc-binding protein, putative
LOC_Os02g44270Os.52516.2.S1_x_at11/112+26778665..26782123expressed protein
LOC_Os02g44270Os.52516.1.S1_x_at9/112+26778665..26782123expressed protein
LOC_Os02g44280OsAffx.24720.1.S1_at11/112+26784122..26785006hypothetical protein
LOC_Os02g44290Os.52688.1.S1_at11/112+26791456..26793339PAP2 superfamily protein, expressed
LOC_Os02g44300Os.14380.1.S1_at11/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300Os.14380.1.S1_s_at11/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300Os.52680.1.S1_at11/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300OsAffx.12491.1.S1_at10/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300OsAffx.12491.1.S1_x_at10/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44310Os.9318.1.S1_at11/112+26799119..26799953Cortical cell delineating protein precursor, putative, expressed
LOC_Os02g44320Os.12829.1.S1_at11/112+26808768..26809673Cortical cell delineating protein precursor, putative, expressed
LOC_Os02g44330Os.49719.1.S1_at11/112+26814539..26817515YbaK/prolyl-tRNA synthetases associated domain containing protein, expressed
LOC_Os02g44340Os.50545.1.S1_at11/112+26817767..26820004expressed protein
LOC_Os02g44350OsAffx.27771.1.S1_x_at11/112+26822577..26824805AT hook motif-containing protein, putative
LOC_Os02g44350OsAffx.27771.2.S1_s_at11/112+26822577..26824805AT hook motif-containing protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9318.1.S1_at--709--1771Chr02:26799602..26799626 (25 bp)
ACCGGCTTCAAGTGCTAAGCAGCGT
LOC_Os02g44310
Os.9318.1.S1_at--1155--2711Chr02:26799618..26799642 (25 bp)
AAGCAGCGTGCATATGCAATGCCTG
LOC_Os02g44310
Os.9318.1.S1_at--691--3491Chr02:26799643..26799667 (25 bp)
CATGGGTTGATCCTACGTACGGTGA
LOC_Os02g44310
Os.9318.1.S1_at--423--4031Chr02:26799658..26799682 (25 bp)
CGTACGGTGATTAGTTGGCTTTGAC
LOC_Os02g44310
Os.9318.1.S1_at--32--8311Chr02:26799674..26799698 (25 bp)
GGCTTTGACGACTCTTGATTTGATT
LOC_Os02g44310
Os.9318.1.S1_at--584--10731Chr02:26799698..26799722 (25 bp)
TTGCTTGCTGCTCTGTTTATTTGCT
LOC_Os02g44310
Os.9318.1.S1_at--237--10351Chr02:26799713..26799737 (25 bp)
TTTATTTGCTACTACGTTACGTACG
LOC_Os02g44310
Os.9318.1.S1_at--446--9011Chr02:26799747..26799771 (25 bp)
TGCAACGCAACGCATGATCGATCGT
LOC_Os02g44310
Os.9318.1.S1_at--527--8851Chr02:26799761..26799785 (25 bp)
TGATCGATCGTGCATGCTGGCTGTT
LOC_Os02g44310
Os.9318.1.S1_at--596--3811Chr02:26799827..26799851 (25 bp)
CTCCTTTGTCTTCTTTGTAGTACTC
LOC_Os02g44310
Os.9318.1.S1_at--120--8771Chr02:26799842..26799866 (25 bp)
TGTAGTACTCTTATTCCCGCTATCC
LOC_Os02g44310
Target Sequence 
ACCGGCTTCAAGTGCTAAGCAGCGTGCATATGCAATGCCTGCATGGGTTGATCCTACGTACGGTGATTAGTTGGCTTTGA
CGACTCTTGATTTGATTTGCTTGCTGCTCTGTTTATTTGCTACTACGTTACGTACGTACTTTGCATGCAACGCAACGCAT
GATCGATCGTGCATGCTGGCTGTTTGTACGTATCACGGTACCAGTTTGGATTCTCTCTGTACTCTCTCCTTTGTCTTCTT
TGTAGTACTCTTATTCCCGCTATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9318.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis