Browse Element(s) Details


Os.9320.1.S1_at

Description gb:AK059889.1
DB_XREF= gi:32969907
TID=Os.9320.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9320 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-208-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-208-C11, full insert sequence.
FL= gb:AK059889.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4219011/11Flavoprotein wrbA, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g42150Os.16010.1.S1_at11/115+24560400..24562711Indole-3-acetic acid-amido synthetase GH3.6, putative, expressed
LOC_Os05g42160NANA5+24564203..24564565hypothetical protein
LOC_Os05g42170NANA5+24575227..24575628transposon protein, putative, unclassified
LOC_Os05g42180OsAffx.27283.3.S1_at11/115+24580707..24582902hypothetical protein
LOC_Os05g42190Os.9320.1.S1_at11/115+24586462..24589916Flavoprotein wrbA, putative, expressed
LOC_Os05g42200OsAffx.27284.1.S1_at11/115+24591502..24592970expressed protein
LOC_Os05g42200OsAffx.27284.1.S1_s_at11/115+24591502..24592970expressed protein
LOC_Os05g42210Os.56528.1.S1_at11/115+24593567..24599401S-locus glycoprotein family protein, expressed
LOC_Os05g42220Os.49510.1.S1_at10/115+24608048..24612274Leucine Rich Repeat family protein, expressed
LOC_Os05g42230Os.11180.1.S1_at11/115+24612998..24616146universal stress protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009733biological_processresponse to auxin stimulus
GO:0010181molecular_functionFMN binding
GO:0016655molecular_functionoxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9320.1.S1_at--208--9451Chr05:24586838..24586862 (25 bp)
TCGGCTACACGTTCGGCGCCAAGAT
LOC_Os05g42190
Os.9320.1.S1_at--1110--5171Chr05:24586703..24586727 (25 bp)
GCAAGTACTTCGCTGGCATCGCCAA
LOC_Os05g42190
Os.9320.1.S1_at--515--3811Chr05:24586663..24586687 (25 bp)
CTCCTCCGCCTGAATCATATACAGA
LOC_Os05g42190
Os.9320.1.S1_at--648--1351Chr05:24586630..24586654 (25 bp)
AGAGATCATTCGCATTGGCTGCCTG
LOC_Os05g42190
Os.9320.1.S1_at--166--31Chr05:24586617..24586641 (25 bp)
ATTGGCTGCCTGTGCTGATTTGATC
LOC_Os05g42190
Os.9320.1.S1_at--741--8831Chr05:24586602..24586626 (25 bp)
TGATTTGATCCGTGTTCATATGCCG
LOC_Os05g42190
Os.9320.1.S1_at--1002--4452Chr05:18614337..18614358 (22 bp)
GCCGGAATTAATCTTTACCGATTCG
NONE
Os.9320.1.S1_at--436--9971Chr05:24586566..24586590 (25 bp)
TACCGATTCGTTACACAAAGATTTG
LOC_Os05g42190
Os.9320.1.S1_at--128--7911Chr05:24586532..24586556 (25 bp)
GGTTGTGGGTTTGATTCTACGTACT
LOC_Os05g42190
Os.9320.1.S1_at--682--6571Chr05:24586520..24586544 (25 bp)
GATTCTACGTACTGTGCTTGTATAA
LOC_Os05g42190
Os.9320.1.S1_at--558--10831Chr05:24586481..24586505 (25 bp)
TTGTGCACTCCCATCGATATTATAC
LOC_Os05g42190
Target Sequence 
TCGGCTACACGTTCGGCGCCAAGATGTTCGACATGGCGGCGGTGCACGGCGGCAGCCCGTACGGCGCCGGCACGTTCGCC
GGCGACGGGTCGAGGTGGCCGTCGGAGGCGGAGCTGGAGCACGCCTTCCACCAGGGCAAGTACTTCGCTGGCATCGCCAA
GAAGCTCAAGGGCGCCTCCTCCGCCTGAATCATATACAGAATTGTTACAGAGATCATTCGCATTGGCTGCCTGTGCTGAT
TTGATCCGTGTTCATATGCCGGAATTAATCTTTACCGATTCGTTACACAAAGATTTGGTTGGATTTGGTTGTGGGTTTGA
TTCTACGTACTGTGCTTGTATAAACTTGTTAAGTTGATTGTGCACTCCCATCGATATTATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9320.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis