Browse Element(s) Details


Os.9346.1.S1_at

Description gb:AK062654.1
DB_XREF= gi:32972672
TID=Os.9346.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.9346 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-E10, full insert sequence.
FL= gb:AK062654.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0131011/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01270Os.9312.1.S1_at11/113+167680..169639Beta-expansin 1a precursor, putative, expressed
LOC_Os03g01280OsAffx.3107.1.S1_at11/113+174927..175946hypothetical protein
LOC_Os03g01290OsAffx.24931.1.S1_at11/113+180963..183822Nitrate/chlorate transporter, putative, expressed
LOC_Os03g01290OsAffx.24931.1.S1_x_at11/113+180963..183822Nitrate/chlorate transporter, putative, expressed
LOC_Os03g01290OsAffx.4023.1.S1_x_at1/113+180963..183822Nitrate/chlorate transporter, putative, expressed
LOC_Os03g01300Os.10171.1.S1_at11/113+186677..187465Cortical cell delineating protein precursor, putative, expressed
LOC_Os03g01310Os.9346.1.S1_at11/113+189424..190168Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g01310Os.10171.1.S1_at1/113+189424..190168Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g01320Os.37616.1.S1_at5/113+198336..199410retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g01330NANA3+214141..215097expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9346.1.S1_at--648--4011Chr03:189566..189590 (25 bp)
CGTCGTTGCTCTGAATATGGTCATC
LOC_Os03g01310
Os.9346.1.S1_at--765--4811Chr03:189573..189597 (25 bp)
GCTCTGAATATGGTCATCTCCATGC
LOC_Os03g01310
Os.9346.1.S1_at--361--9171Chr03:189936..189960 (25 bp)
TGCCCACTCATCTGATTCTTAATCT
LOC_Os03g01310
Os.9346.1.S1_at--210--4191Chr03:189970..189994 (25 bp)
CCACAACCCTAGCTACCTAATTAAG
LOC_Os03g01310
Os.9346.1.S1_at--932--131Chr03:189989..190013 (25 bp)
ATTAAGGCTTAAGCTTTGCATGGCT
LOC_Os03g01310
Os.9346.1.S1_at--668--3891Chr03:190018..190042 (25 bp)
CTGTGTGTTGCAGTTGTGTCATACA
LOC_Os03g01310
Os.9346.1.S1_at--624--5031Chr03:190027..190051 (25 bp)
GCAGTTGTGTCATACATATATACTT
LOC_Os03g01310
Os.9346.1.S1_at--675--331Chr03:190046..190070 (25 bp)
ATACTTATCTCGATCTATCAGTGTG
LOC_Os03g01310
Os.9346.1.S1_at--1087--6431Chr03:190080..190104 (25 bp)
GATCAGATCGATCATCTAATATATG
LOC_Os03g01310
Os.9346.1.S1_at--1062--3611Chr03:190108..190132 (25 bp)
CTTGTTATTTTAATGCGTACTGTCA
LOC_Os03g01310
Os.9346.1.S1_at--232--9711Chr03:190130..190154 (25 bp)
TCAAATAAAAGTTTCCTCCAGTGTA
LOC_Os03g01310
Target Sequence 
CGTCGTTGCTCTGAATATGGTCATCTCCATGCNNATGGGTGCAGTGCAGGCNTGCGAGCCCTACTGCCCCACCCCGACGC
CGCCGGTGACGCCGCCTCCGTCGCCGCCGTCGGGTGGAGCGAATAAGTGCCCGATCGACGCGCTGAAGCTGGGCGTGTGC
GCCAACGTGCTCAACCTGCTCAAGCTCAAGGTGGGGGNTGCCGGCGAGCGAGGAGTGCTGCCCGCTGCTGGGGGGGCTCG
TCGACCTCGACGCCGCCGTCTGCCTCTGCACCGCCATCAAGGCCAACGTCCTCGGCATCAACATCAACGTCCCCGTCGAC
CTCGTCCTCCTCCTCAACTACTGCCACAAGACCTGCCCTTCCGACTTCTNCTGCCCACTCATCTGATTCTTAATCTTCAT
TACCACCACAACCCTAGCTACCTAATTAAGGCTTAAGCTTTGCATGGCTTANTCTGTGTGTTGCAGTTGTGTCATACATA
TATACTTATCTCGATCTATCAGTGTGATTATTGATGATCAGATCGATCATCTAATATATGTATCTTGTTATTTTAATGCG
TACTGTCAAATAAAAGTTTCCTCCAGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9346.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis