Browse Element(s) Details


Os.9363.1.S1_at

Description gb:AK073472.1
DB_XREF= gi:32983495
TID=Os.9363.1
CNT=33
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9363 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA, partial homologous to ribosomal protein L7 gene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044G24, full insert sequence.
FL= gb:AK073472.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5163010/1160S ribosomal protein L7-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51610Os.28422.1.S1_at11/114+30353060..30365210Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed
LOC_Os04g51620NANA4+30375103..30376055hypothetical protein
LOC_Os04g51630Os.9363.2.S1_x_at10/114+30380850..3038326060S ribosomal protein L7-1, putative, expressed
LOC_Os04g51630Os.9363.1.S1_at10/114+30380850..3038326060S ribosomal protein L7-1, putative, expressed
LOC_Os04g51640OsAffx.26563.1.S1_at11/114+30386746..30387750hypothetical protein
LOC_Os04g51650OsAffx.14369.1.S1_at11/114+30388565..30388873hypothetical protein
LOC_Os04g51660Os.53597.1.S1_at11/114+30389791..30391315Transferase family protein, expressed
LOC_Os04g51680NANA4+30396879..30397094hypothetical protein
LOC_Os04g51690Os.11439.1.S1_at11/114+30402082..30409268Glycosyl hydrolase family 47 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9363.1.S1_at--937--9951Chr04:30382598..30382622 (25 bp)
TACCCAAATTTGAAGAGTGTCCGTG
LOC_Os04g51630
Os.9363.1.S1_at--516--5131Chr04:30382660..30382684 (25 bp)
GCAAAGAATCCCTCTTACAAACAAC
LOC_Os04g51630
Os.9363.1.S1_at--181--2191Chr04:30382676..30382700 (25 bp)
ACAAACAACAAAGTCATCGAGGAGG
LOC_Os04g51630
Os.9363.1.S1_at--1117--691Chr04:30382819..30382843 (25 bp)
ATGAGATCATGACTGTTGGCCCACA
LOC_Os04g51630
Os.9363.1.S1_at--571--1931Chr04:30382830..30382854 (25 bp)
ACTGTTGGCCCACATTTCAAGGAGG
LOC_Os04g51630
Os.9363.1.S1_at--24--7331Chr04:30383144..30383168 (25 bp)
GTGCTTTTAATCATGATATGCGAAC
LOC_Os04g51630
Os.9363.1.S1_at--542--6491Chr04:30383158..30383182 (25 bp)
GATATGCGAACATGTGTTAGTACTT
LOC_Os04g51630
Os.9363.1.S1_at--989--1171Chr04:30383176..30383200 (25 bp)
AGTACTTATTATGGCTCTACTGCCT
LOC_Os04g51630
Os.9363.1.S1_at--474--4452Chr07:19883766..19883789 (23 bp)
GCCTTTGTGTTGACATCACGGTTGC
NONE
Os.9363.1.S1_at--329--391Chr04:30383211..30383235 (25 bp)
ATCACGGTTGCTGTTCAGCTCTTAT
LOC_Os04g51630
Os.9363.1.S1_at--787--6751NONE
GTTCAGCTCTTATACCATTTATACA
NONE
Target Sequence 
TACCCAAATTTGAAGAGTGTCCGTGAATTGATCTACAAGAGGGGCTATGGAAAGCTCAACAAGCAAAGAATCCCTCTTAC
AAACAACAAAGTCATCGAGGAGGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATCATGACTG
TTGGCCCACATTTCAAGGAGGCCAACAACTTCCTCTGGCCATTCAAGCTGAAGGCACCACTGGGTGGGCTGAAGAAGAAG
AGGAACCACTACGTTGAGGGTGGTGATGCTGGTAACCGTGAGAACTACATCAACGAACTCATCAGAAGGATGAACTAGTT
CCATGAGCTCATTGTTAGCGCACTGTGTTTGGATGATATTTTAAAGTAAGCTTATTTTGCACTAGGAAGTGTATCAAGAA
AATCTTGCAATTTTGATATTCAGAATCTGACCCTTTTATCCGGTGGTTTGATGTTATTCCTAAATTTGAAGTGCTTTTAA
TCATGATATGCGAACATGTGTTAGTACTTATTATGGCTCTACTGCCTTTGTGTTGACATCACGGTTGCTGTTCAGCTCTT
ATACCATTTATACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9363.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis