Browse Element(s) Details


Os.9389.1.A1_a_at

Description gb:AF251031.1
DB_XREF= gi:7649260
GEN=ACE
TID=Os.9389.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9389 (NCBI UniGene Cluster)
DEF=Oryza sativa putative mandelonitrile lyase (ACE) mRNA, complete cds.
PROD=putative mandelonitrile lyase
FL= gb:AF251031.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3805011/11HOTHEAD protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37990OsAffx.20185.1.S1_at10/1110+20022516..20025009hypothetical protein
LOC_Os10g38000OsAffx.30708.1.S1_x_at11/1110+20025393..20025974AP2 domain containing protein
LOC_Os10g38020Os.23271.2.A1_x_at11/1110+20031264..20035426expressed protein
LOC_Os10g38020Os.23271.1.S1_at1/1110+20031264..20035426expressed protein
LOC_Os10g38030Os.21030.1.S1_at11/1110+20035645..20038586Per1-like family protein, expressed
LOC_Os10g38040Os.51639.1.S1_x_at11/1110+20044569..20045771LysM domain containing protein, expressed
LOC_Os10g38040Os.11882.1.S1_at11/1110+20044569..20045771LysM domain containing protein, expressed
LOC_Os10g38060Os.9389.2.S2_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060Os.9389.2.S1_s_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060OsAffx.30709.1.S1_x_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060Os.9389.2.S2_a_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38050Os.9389.1.A1_a_at11/1110+20047512..20049888HOTHEAD protein precursor, putative, expressed
LOC_Os10g38050OsAffx.12714.1.S1_x_at2/1110+20047512..20049888HOTHEAD protein precursor, putative, expressed
LOC_Os10g38070OsAffx.7960.1.S1_at11/1110+20058201..20059181expressed protein
LOC_Os10g38080Os.6363.1.S1_at11/1110+20059961..20062501Subtilisin N-terminal Region family protein, expressed
LOC_Os10g38090Os.39214.1.S1_at11/1110+20065112..20069616Cytochrome P450 family protein, expressed
LOC_Os10g38094NANA10+20070971..20071742hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007267biological_processcell-cell signaling
GO:0005576cellular_componentextracellular region
GO:0016832molecular_functionaldehyde-lyase activity
GO:0046593molecular_functionmandelonitrile lyase activity
GO:0050660molecular_functionFAD binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9389.1.A1_a_at--684--7211Chr10:20049247..20049271 (25 bp)
GTCGAGTCCATCTTCACCGATTCCG
LOC_Os10g38050
Os.9389.1.A1_a_at--1038--8051Chr10:20049324..20049348 (25 bp)
GGAGCAGTACTGCATGGACACCGTC
LOC_Os10g38050
Os.9389.1.A1_a_at--5--7211Chr10:20049391..20049415 (25 bp)
GTCGTCGACGACGATTACCGGGTGT
LOC_Os10g38050
Os.9389.1.A1_a_at--73--811Chr10:20049599..20049623 (25 bp)
ATGGGTGTGAAGATTCAGTCCGAGA
LOC_Os10g38050
Os.9389.1.A1_a_at--56--2811Chr10:20049645..20049669 (25 bp)
AAGATAATTTCGTTTCAGGAGCAAA
LOC_Os10g38050
Os.9389.1.A1_a_at--1027--6071Chr10:20049722..20049746 (25 bp)
GAGTAGATTTTATTTGCACCCACTT
LOC_Os10g38050
Os.9389.1.A1_a_at--635--5091Chr10:20049737..20049761 (25 bp)
GCACCCACTTAATTTTTACTCTTCT
LOC_Os10g38050
Os.9389.1.A1_a_at--415--9911Chr10:20049753..20049777 (25 bp)
TACTCTTCTCTAGACATAGGTTCAG
LOC_Os10g38050
Os.9389.1.A1_a_at--609--3571Chr10:20049767..20049791 (25 bp)
CATAGGTTCAGTATCTGCTTGTTGA
LOC_Os10g38050
Os.9389.1.A1_a_at--98--3851Chr10:20049781..20049805 (25 bp)
CTGCTTGTTGATTATGTAACCTTGA
LOC_Os10g38050
Os.9389.1.A1_a_at--261--3951Chr10:20049827..20049851 (25 bp)
CGGAAACTTATGTTACCAAGGGCAT
LOC_Os10g38050
Target Sequence 
GTCGAGTCCATCTTCACCGATTCCGCCAACTTCCCCGTCAACCTGCTGCCGCGCCATGTCAACGACTCGCGCTCGCCGGA
GCAGTACTGCATGGACACCGTCATGACCATCTGGCACTACCACGGCGGCTGCCATGTCGGCGCCGTCGTCGACGACGATT
ACCGGGTGTTCGGGGTGCATGGGCTCAGGGTGATCGACAGCTCCACCTTCAAGTACTCCCCCGGCACCAACCCTCAGGCC
ACCGTCATGATGCTCGGCAGGTATATGGGTGTGAAGATTCAGTCCGAGAGATGGAAGAAATGATGAACAAAAGATAATTT
CGTTTCAGGAGCAAAAAAATGCATGTAATTCAAGGAAAAGAAAATGTTCAACTGTCCTTAGAGTTTAGAGTAGATTTTAT
TTGCACCCACTTAATTTTTACTCTTCTCTAGACATAGGTTCAGTATCTGCTTGTTGATTATGTAACCTTGAAGAAGCATT
GCAAAAACAAAGCGGAAACTTATGTTACCAAGGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9389.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis