Browse Element(s) Details


Os.9465.1.S1_s_at

Description gb:AK099046.1
DB_XREF= gi:32984255
TID=Os.9465.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9465 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013146B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146B09, full insert sequence.
FL= gb:AK061880.1 gb:AK099046.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2694011/11ORMDL family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26900OsAffx.28611.1.S1_at11/117+15578389..15582560Alpha-galactosidase precursor, putative
LOC_Os07g26910Os.21854.1.S1_at2/117+15586962..15589233hypothetical protein
LOC_Os07g26920NANA7+15594065..155952743'-5' exonuclease domain-containing protein, putative, expressed
LOC_Os07g26930Os.5180.1.S1_at8/117+15596320..155989153'-5' exonuclease domain-containing protein, putative, expressed
LOC_Os07g26940Os.56132.1.S1_at11/117+15600331..15602884ORMDL family protein, expressed
LOC_Os07g26940Os.47132.1.A1_s_at11/117+15600331..15602884ORMDL family protein, expressed
LOC_Os07g26940Os.9465.1.S1_s_at11/117+15600331..15602884ORMDL family protein, expressed
LOC_Os07g26950OsAffx.28612.1.S1_at9/117+15607946..15609721hypothetical protein
LOC_Os07g26950OsAffx.27754.1.S1_at1/117+15607946..15609721hypothetical protein
LOC_Os07g26960OsAffx.16431.1.S1_at11/117+15612888..15614643hypothetical protein
LOC_Os07g26960OsAffx.16431.1.S1_x_at11/117+15612888..15614643hypothetical protein
LOC_Os07g26974Os.22838.2.S1_at11/117+15616636..15620244expressed protein
LOC_Os07g26974Os.22838.3.S1_x_at11/117+15616636..15620244expressed protein
LOC_Os07g26974Os.22838.1.S1_x_at11/117+15616636..15620244expressed protein
LOC_Os07g26974OsAffx.28613.1.S1_at1/117+15616636..15620244expressed protein
LOC_Os07g26990OsAffx.16432.1.S1_at10/117+15622895..15624094hypothetical protein
LOC_Os07g27000OsAffx.22355.1.S1_at11/117+15625101..15629991retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0005783cellular_componentendoplasmic reticulum
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9465.1.S1_s_at--694--4771Chr07:15601544..15601568 (25 bp)
GCTGCTGATGACCAAGGCATCTACA
LOC_Os07g26940
Os.9465.1.S1_s_at--220--8271Chr07:15601529..15601553 (25 bp)
GGCATCTACAACAGACTAACTTGGT
LOC_Os07g26940
Os.9465.1.S1_s_at--296--3271Chr07:15601521..15601545 (25 bp)
CAACAGACTAACTTGGTGGGAACAA
LOC_Os07g26940
Os.9465.1.S1_s_at--711--7571Chr07:15601504..15601528 (25 bp)
GGGAACAAATTGATAACGGGCAGCA
LOC_Os07g26940
Os.9465.1.S1_s_at--481--10751Chr07:15601495..15601519 (25 bp)
TTGATAACGGGCAGCAACTTACTCG
LOC_Os07g26940
Os.9465.1.S1_s_at--742--1911Chr07:15601489..15601513 (25 bp)
ACGGGCAGCAACTTACTCGTAATAG
LOC_Os07g26940
Os.9465.1.S1_s_at--687--3651Chr07:15601478..15601502 (25 bp)
CTTACTCGTAATAGGAAGTTCTTGA
LOC_Os07g26940
Os.9465.1.S1_s_at--366--2831Chr07:15601463..15601487 (25 bp)
AAGTTCTTGACTGTGGTACCTGTGG
LOC_Os07g26940
Os.9465.1.S1_s_at--377--3631Chr07:15601458..15601482 (25 bp)
CTTGACTGTGGTACCTGTGGTGCTG
LOC_Os07g26940
Os.9465.1.S1_s_at--1059--8831Chr07:15600772..15600796 (25 bp)
TGATCGCGTCACACTTGACCGACTA
LOC_Os07g26940
Os.9465.1.S1_s_at--180--5831Chr07:15600756..15600780 (25 bp)
GACCGACTACAAACAGCCAATGCTT
LOC_Os07g26940
Target Sequence 
GCTGCTGATGACCAAGGCATCTACAACAGACTAACTTGGTGGGAACAAATTGATAACGGGCAGCAACTTACTCGTAATAG
GAAGTTCTTGACTGTGGTACCTGTGGTGCTGTACCTGATCGCGTCACACTTGACCGACTACAAACAGCCAATGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9465.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis