Browse Element(s) Details


Os.9492.1.S1_a_at

Description gb:AB028180.1
DB_XREF= gi:27529807
GEN=OsNAC1
TID=Os.9492.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9492 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for OsNAC1 protein, complete cds.
PROD=OsNAC1 protein
FL= gb:AB028180.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3688011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36850OsAffx.12379.1.S1_at11/112+22228630..22229486Oxygen evolving enhancer protein 3, putative, expressed
LOC_Os02g36860OsAffx.12380.1.S1_at11/112+22231145..22231534hypothetical protein
LOC_Os02g36870Os.11959.1.S1_at11/112+22239136..22241669expressed protein
LOC_Os02g36880Os.9492.1.S1_a_at11/112+22252971..22254789No apical meristem protein, expressed
LOC_Os02g36880Os.51926.1.S1_x_at1/112+22252971..22254789No apical meristem protein, expressed
LOC_Os02g36890OsAffx.24606.3.S1_at11/112+22262051..22264368Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g36890OsAffx.24606.2.S1_x_at1/112+22262051..22264368Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0010072biological_processprimary shoot apical meristem specification
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9492.1.S1_a_at--1133--4491Chr02:22254328..22254352 (25 bp)
GCCGTTCTTGGAGGCCCTGCAGATG
LOC_Os02g36880
Os.9492.1.S1_a_at--561--8411Chr02:22254340..22254364 (25 bp)
GGCCCTGCAGATGCAGTACGTCCAG
LOC_Os02g36880
Os.9492.1.S1_a_at--49--3511Chr02:22254391..22254415 (25 bp)
CATGGTGCACGAGCTGCTCATGGGC
LOC_Os02g36880
Os.9492.1.S1_a_at--349--1811Chr02:22254471..22254495 (25 bp)
ACACCGGCCTCACGTCGTCGGAGGT
LOC_Os02g36880
Os.9492.1.S1_a_at--1136--7351Chr02:22254494..22254518 (25 bp)
GTGAACCCCGGCGAGATCTCGTCGT
LOC_Os02g36880
Os.9492.1.S1_a_at--751--7231Chr02:22254520..22254544 (25 bp)
GTCGCGGCAGCAACGCATGGATCAT
LOC_Os02g36880
Os.9492.1.S1_a_at--1119--4991Chr02:22254534..22254558 (25 bp)
GCATGGATCATCACGACGCGTCCCT
LOC_Os02g36880
Os.9492.1.S1_a_at--957--1811Chr02:22254549..22254573 (25 bp)
ACGCGTCCCTCTGGGCCTATTGAAA
LOC_Os02g36880
Os.9492.1.S1_a_at--133--10731Chr02:22254597..22254621 (25 bp)
TTGCATTAGCCATTATTATTAGTAC
LOC_Os02g36880
Os.9492.1.S1_a_at--18--10411Chr02:22254612..22254636 (25 bp)
TTATTAGTACTGTTGGCCACCGATT
LOC_Os02g36880
Os.9492.1.S1_a_at--583--6611Chr02:22254623..22254647 (25 bp)
GTTGGCCACCGATTATTGATTGTGT
LOC_Os02g36880
Target Sequence 
GCCGTTCTTGGAGGCCCTGCAGATGCAGTACGTCCAGGACGCCGCCGCCGCCGGAGGAGCGGGCATGGTGCACGAGCTGC
TCATGGGCGGCGGCTGGTATTGCAACAAGGGCGAGAGGGAGAGGCTGAGCGGCGCCTCGCAGGACACCGGCCTCACGTCG
TCGGAGGTGAACCCCGGCGAGATCTCGTCGTCGTCGCGGCAGCAACGCATGGATCATCACGACGCGTCCCTCTGGGCCTA
TTGAAATATTCATTCATCATCATTGAAAATTGCATTAGCCATTATTATTAGTACTGTTGGCCACCGATTATTGATTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9492.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis