Browse Element(s) Details


Os.9559.1.S1_at

Description gb:C29045
DB_XREF= gi:2312890
DB_XREF=C29045
CLONE=C63285_1A
TID=Os.9559.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.9559 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3757011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37520OsAffx.25399.1.S1_at11/113+20770570..20771257hypothetical protein
LOC_Os03g37540OsAffx.25401.1.S1_at11/113+20776641..20778676hypothetical protein
LOC_Os03g37554Os.40288.1.S1_x_at1/113+20781198..20788366retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37554Os.41248.4.S1_x_at1/113+20781198..20788366retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37570Os.9559.1.S1_at11/113+20792579..20794424expressed protein
LOC_Os03g37570OsAffx.3422.1.S1_s_at11/113+20792579..20794424expressed protein
LOC_Os03g37580Os.24640.1.A1_at11/113+20796877..20801512Modifier of rudimentary protein, expressed
LOC_Os03g37610Os.10827.1.S1_x_at10/113+20812439..20816377transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37610Os.46055.2.S1_x_at6/113+20812439..20816377transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37620NANA3+20816860..20817222hypothetical protein
LOC_Os03g37630OsAffx.25936.1.S1_s_at8/113+20818718..20822402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37630OsAffx.25936.1.S1_at8/113+20818718..20822402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37630OsAffx.25936.7.S1_s_at7/113+20818718..20822402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37630OsAffx.25936.2.S1_x_at4/113+20818718..20822402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37630OsAffx.25936.5.S1_x_at3/113+20818718..20822402transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9559.1.S1_at--424--6011Chr03:20792896..20792920 (25 bp)
GAGAGCTAGCTTGATCAGGTCCCGT
LOC_Os03g37570
Os.9559.1.S1_at--1033--671Chr03:20792837..20792861 (25 bp)
ATGACAGTCTCTTTTTGGTGCCCGT
LOC_Os03g37570
Os.9559.1.S1_at--737--7291Chr03:20792814..20792838 (25 bp)
GTGCCCCGTGAACGATCTGTCAGTA
LOC_Os03g37570
Os.9559.1.S1_at--838--471Chr03:20792800..20792824 (25 bp)
ATCTGTCAGTATCTTTTGCCGAGGA
LOC_Os03g37570
Os.9559.1.S1_at--872--10391Chr03:20792787..20792811 (25 bp)
TTTTGCCGAGGAAAGACAGGTTTAT
LOC_Os03g37570
Os.9559.1.S1_at--1007--5651Chr03:20792773..20792797 (25 bp)
GACAGGTTTATTGGACCAGTGTGTT
LOC_Os03g37570
Os.9559.1.S1_at--28--1731Chr03:20792759..20792783 (25 bp)
ACCAGTGTGTTTCAGTTCATTTGCA
LOC_Os03g37570
Os.9559.1.S1_at--338--8491Chr03:20792703..20792727 (25 bp)
TGGCTAGGCAATTGTGGCGCACGCT
LOC_Os03g37570
Os.9559.1.S1_at--96--3331Chr03:20792684..20792708 (25 bp)
CACGCTCTTTTGCTCGAAACTTTTA
LOC_Os03g37570
Os.9559.1.S1_at--243--10731Chr03:20792675..20792699 (25 bp)
TTGCTCGAAACTTTTATGGCTGTGC
LOC_Os03g37570
Os.9559.1.S1_at--242--2551Chr03:20792649..20792673 (25 bp)
AACTGCCAAGTATGGTTCTGCTTGA
LOC_Os03g37570
Target Sequence 
GAGAGCTAGCTTGATCAGGTCCCGTTCCAACAGATCATGAACAGCCTGATCTTATGAGCATGACAGTCTCTTTTTGGTGC
CCGTGCCCCGTGAACGATCTGTCAGTATCTTTTGCCGAGGAAAGACAGGTTTATTGGACCAGTGTGTTTCAGTTCATTTG
CACGTACGTNNTGTNGTGTTAGTGTCATCATCGTTGGCTAGGCAATTGTGGCGCACGCTCTTTTGCTCGAAACTTTTATG
GCTGTGCNAACTGCCAAGTATGGTTCTGCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9559.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis