Browse Element(s) Details


Os.9563.1.S1_at

Description gb:AK068735.1
DB_XREF= gi:32978754
TID=Os.9563.1
CNT=20
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.9563 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-027-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013158D09, full insert sequence.
FL= gb:AK068735.1 gb:AK104072.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3216011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32120Os.12379.1.S1_at9/118+19795820..19796465expressed protein
LOC_Os08g32130Os.24686.1.A1_at7/118+19804317..19807591DnaJ domain containing protein, expressed
LOC_Os08g32140NANA8+19809907..19812014retrotransposon, putative, centromere-specific, expressed
LOC_Os08g32150NANA8+19813505..19814668retrotransposon, putative, centromere-specific, expressed
LOC_Os08g32160Os.9563.1.S1_at11/118+19817711..19819546oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g32170Os.10186.1.S1_s_at11/118+19821914..19823324oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g32180NANA8+19825936..19827549hypothetical protein
LOC_Os08g32190NANA8+19829684..19832420hypothetical protein
LOC_Os08g32200NANA8+19834372..19834668hypothetical protein
LOC_Os08g32210OsAffx.20293.1.S1_at1/118+19835714..19837346retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g32210OsAffx.20293.2.S1_at1/118+19835714..19837346retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g32220NANA8+19839898..19841572hypothetical protein
LOC_Os08g32230NANA8+19842028..19842942retrotransposon protein, putative, unclassified
LOC_Os08g32240OsAffx.22699.1.S1_x_at4/118+19843492..19845685retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0019761biological_processglucosinolate biosynthesis
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9563.1.S1_at--882--5931Chr08:19818811..19818835 (25 bp)
GAGCACCGGGACGACACCGTGATCA
LOC_Os08g32160
Os.9563.1.S1_at--972--2171Chr08:19818705..19818729 (25 bp)
ACACGGTCGCCTTCATGGCCGGTGA
LOC_Os08g32160
Os.9563.1.S1_at--798--9871Chr08:19818117..19818141 (25 bp)
TACAGGCCGTGCAACGAGGACGAGT
LOC_Os08g32160
Os.9563.1.S1_at--523--951Chr08:19818101..19818125 (25 bp)
AGGACGAGTACGTCCAGTTCCGCCA
LOC_Os08g32160
Os.9563.1.S1_at--1101--1251Chr08:19818060..19818084 (25 bp)
AGATTCAGCGAACCGCTCAAGGCGT
LOC_Os08g32160
Os.9563.1.S1_at--785--8031Chr08:19818030..19818054 (25 bp)
GGAGTAGACGTACGCTAGCTGCACA
LOC_Os08g32160
Os.9563.1.S1_at--387--4851Chr08:19818017..19818041 (25 bp)
GCTAGCTGCACAATGATCCACTGAA
LOC_Os08g32160
Os.9563.1.S1_at--857--6111Chr08:19817969..19817993 (25 bp)
GAGTGGTAGTACCTATCATCTTCAG
LOC_Os08g32160
Os.9563.1.S1_at--120--3651Chr08:19817950..19817974 (25 bp)
CTTCAGTTAGTGCTGGTTACTCGTC
LOC_Os08g32160
Os.9563.1.S1_at--388--8571Chr08:19817937..19817961 (25 bp)
TGGTTACTCGTCTTTATGGGTTGTT
LOC_Os08g32160
Os.9563.1.S1_at--608--2971Chr08:19817910..19817934 (25 bp)
AATGTTTGTTCTCTTACGTTTCTGA
LOC_Os08g32160
Target Sequence 
GAGCACCGGGACGACACCGTGATCACCATCATCGTGCAGCACGAGGTGGAGGGCCTCGAGGTGCAGGCCAGCGACGGCAG
CTGGCACACGATCCCCCCTGAGCCGGACACGGTCGCCTTCATGGCCGGTGAGCTGTTCACGGTGGTGACGAACGGGCGGG
TGCCCGCGTGCGTGCACCGCGTGAGGACGCCGAGCCACCGCGAGCGGCTCGTGGCGCTGTTCACCACGCGGTGCAAGGGC
GGCACCGTGGTGAGCGCCATGGACGAGCTCGTCGACGGCGACCACCCGCTGGCGTACAGGCCGTGCAACGAGGACGAGTA
CGTCCAGTTCCGCCACTCGGAGGAGGGCGGCAGATTCAGCGAACCGCTCAAGGCGTTCTGCGGAGTAGACGTACGCTAGC
TGCACAATGATCCACTGAAGATGATCCTTGGATTGGAAGTATGAGTGGTAGTACCTATCATCTTCAGTTAGTGCTGGTTA
CTCGTCTTTATGGGTTGTTTGAATGTTTGTTCTCTTACGTTTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis