Browse Element(s) Details


Os.9624.1.S1_a_at

Description gb:AK102567.1
DB_XREF= gi:32987776
TID=Os.9624.1
CNT=25
FEA=FLmRNA
TIER=FL+Stack
STK=15
UG=Os.9624 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033097K24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033097K24, full insert sequence.
FL= gb:AK102567.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4242011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42400Os.11141.1.S1_at11/118+26633973..26637492No apical meristem protein, expressed
LOC_Os08g42410Os.18710.1.S1_at10/118+26645139..26650451Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os08g42420Os.9624.1.S1_a_at11/118+26652840..26658222expressed protein
LOC_Os08g42430OsAffx.17475.1.S1_at10/118+26658996..26659680plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os08g42440Os.25599.1.A1_at10/118+26659995..26664271CCT motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9624.1.S1_a_at--629--2171Chr08:26657365..26657389 (25 bp)
ACACCGATTCTGATGATTGTTGCTG
LOC_Os08g42420
Os.9624.1.S1_a_at--543--71Chr08:26657419..26657443 (25 bp)
ATTGCTGTGCATCTTCTAGGATTAA
LOC_Os08g42420
Os.9624.1.S1_a_at--628--1051Chr08:26657459..26657483 (25 bp)
AGGTGTGATTCGCTATGCTCTGCAC
LOC_Os08g42420
Os.9624.1.S1_a_at--713--6331Chr08:26657525..26657549 (25 bp)
GATGCTACGATGCAAATCCGATCCA
LOC_Os08g42420
Os.9624.1.S1_a_at--402--6371Chr08:26657544..26657568 (25 bp)
GATCCATCATCGGTGCCATATGATA
LOC_Os08g42420
Os.9624.1.S1_a_at--643--8111Chr08:26657585..26657609 (25 bp)
GGACGATCGCAGATTCTACCTTTAT
LOC_Os08g42420
Os.9624.1.S1_a_at--1127--7471Chr08:26657960..26657984 (25 bp)
GTGTGGAACATGACTTCCCTGCTGA
LOC_Os08g42420
Os.9624.1.S1_a_at--678--9791Chr08:26658002..26658026 (25 bp)
TAAGCAATTGACACCTCTGCTTCTC
LOC_Os08g42420
Os.9624.1.S1_a_at--561--9031Chr08:26658038..26658062 (25 bp)
TGCAGCTAAGCTCTCATGTCATTTG
LOC_Os08g42420
Os.9624.1.S1_a_at--111--7451Chr08:26658062..26658086 (25 bp)
GTGTACATAGCATGCGCTTTCTTGC
LOC_Os08g42420
Os.9624.1.S1_a_at--1063--6271Chr08:26658151..26658175 (25 bp)
GATGTATTTATCAGTCGCAACCAAC
LOC_Os08g42420
Target Sequence 
ACACCGATTCTGATGATTGTTGCTGTCAGATGGACAATTTAGGTGGCAAGAATTATTGCTGTGCATCTTCTAGGATTAAT
GATAGCTCGGGTGGAGGTGTGATTCGCTATGCTCTGCACCTGCGCTTTCTATGCCCTTCCTCCAAGAAATCCTCAAAATC
GATGCTACGATGCAAATCCGATCCATCATCGGTGCCATATGATAGTAATGCCGCGAAAGAGGACGATCGCAGATTCTACC
TTTATAATGATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAGCTGCGTGTGGAACATGACTTC
CCTGCTGATCCCAAGTACTTCGACATAAGCAATTGACACCTCTGCTTCTCCTCCTTGTGCATGCAGCTAAGCTCTCATGT
CATTTGTGTACATAGCATGCGCTTTCTTGCGCACAAAAAAAAAATGTAAATATCTTTTTAATCCTTCTTAACTTGTCATC
ACTCATCAGCCCCCGATGTATTTATCAGTCGCAACCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9624.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis