Browse Element(s) Details


Os.9786.1.S1_at

Description gb:AK058678.1
DB_XREF= gi:32968696
TID=Os.9786.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9786 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-018-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-H10, full insert sequence.
FL= gb:AK058678.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3275910/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32720Os.26803.1.S1_at11/1111+18829542..18834002Zinc knuckle family protein, expressed
LOC_Os11g32730OsAffx.19130.1.S1_at11/1111+18836274..18836675hypothetical protein
LOC_Os11g32740OsAffx.19131.1.S1_at11/1111+18847494..18847802hypothetical protein
LOC_Os11g32750Os.33742.1.S1_at11/1111+18851426..18855715Nudix hydrolase 13, mitochondrial precursor, putative, expressed
LOC_Os11g32759Os.11375.1.S1_at11/1111+18853271..18856610expressed protein
LOC_Os11g32759Os.9786.1.S1_at10/1111+18853271..18856610expressed protein
LOC_Os11g32770OsAffx.26050.2.S2_x_at3/1111+18857091..18857414Ribulose bisphosphate carboxylase large chain, putative
LOC_Os11g32780Os.9454.1.S1_at11/1111+18861036..18864624expressed protein
LOC_Os11g32790Os.57204.1.S1_at1/1111+18867690..18869106hypothetical protein
LOC_Os11g32800NANA11+18873982..18874634hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9786.1.S1_at--533--9351Chr11:18853759..18853783 (25 bp)
TCGCATCCAGTCGTACCTGCAGAGG
LOC_Os11g32759
Os.9786.1.S1_at--708--1431Chr11:18853694..18853718 (25 bp)
AGAACATCATGTGAGCTTCTTGCTG
LOC_Os11g32759
Os.9786.1.S1_at--910--9191Chr11:18853671..18853695 (25 bp)
TGCCATCATCTCATCAGGTGGTGAT
LOC_Os11g32759
Os.9786.1.S1_at--379--8631Chr11:18853574..18853598 (25 bp)
TGGGTGGTCTGCTCAGGCCATGACT
LOC_Os11g32759
Os.9786.1.S1_at--477--1491Chr11:18853527..18853551 (25 bp)
AGCAAACATGTAGCCCTTGCAGGCC
LOC_Os11g32759
Os.9786.1.S1_at--619--5351NONE
GAAGATCCAATTCTCCCAGTGGTGT
NONE
Os.9786.1.S1_at--671--1091Chr11:18853448..18853472 (25 bp)
AGTGGTGTCCCCTGAATTAATTTCA
LOC_Os11g32759
Os.9786.1.S1_at--449--2531Chr11:18853419..18853443 (25 bp)
AACTTTGTCAGCTGATTGGTTACTC
LOC_Os11g32759
Os.9786.1.S1_at--880--10851Chr11:18853404..18853428 (25 bp)
TTGGTTACTCTGTTCTATGCTACTC
LOC_Os11g32759
Os.9786.1.S1_at--10--3711Chr11:18853390..18853414 (25 bp)
CTATGCTACTCCTGAATCTTTTACA
LOC_Os11g32759
Os.9786.1.S1_at--116--3131Chr11:18853305..18853329 (25 bp)
AATTTCTGTCTCTGACACTGTTGGA
LOC_Os11g32759
Target Sequence 
TCGCATCCAGTCGTACCTGCAGAGGCCGTACGCCTCCTCAACCGGCACCTGAAATTCTTGCAACAAGAACATCATGTGAG
CTTCTTGCTGCCATCATCTCATCAGGTGGTGATCTCTGAACATGATGAACTGAAACTGAAACTGGAAACTGTAGAATGGG
ATGTATGCTCACCCATCTCCTGCCATGGGTGGTCTGCTCAGGCCATGACTCCAGCAACTCTGTCACCTGGAGAGCAAACA
TGTAGCCCTTGCAGGCCCCTTGCAGGCCACAGCTGTTCTGCTTGCTCTTGCTCTTGAAGATCCAATTCTCCCAGTGGTGT
CCCCTGAATTAATTTCAGCACAACTTTGTCAGCTGATTGGTTACTCTGTTCTATGCTACTCCTGAATCTTTTACATATCT
GAATGATGTGCTTGAAACTTTGACATGTAAAAAAAGTTCAGGAAAAGCTCATTGCAATTTCTGTCTCTGACACTGTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9786.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis