Browse Element(s) Details


Os.9822.2.S1_a_at

Description gb:AK101299.1
DB_XREF= gi:32986508
TID=Os.9822.2
CNT=18
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.9822 (NCBI UniGene Cluster)
UG_TITLE=MRNA for glutelin, complete cds, clone:lambda RG55
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033J09, full insert sequence.
FL= gb:AK101299.1 gb:AK068139.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5367011/11YT521-B-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53630Os.10544.1.S2_at11/113+30698003..30706129acetyltransferase, GNAT family protein, expressed
LOC_Os03g53630Os.10544.1.S1_at10/113+30698003..30706129acetyltransferase, GNAT family protein, expressed
LOC_Os03g53640Os.20176.1.S1_at11/113+30706199..30707865expressed protein
LOC_Os03g53650Os.7102.1.S1_at11/113+30710412..30714085Cysteine synthase, putative, expressed
LOC_Os03g53660Os.46743.3.S1_a_at11/113+30714994..30724355myosin family protein, putative, expressed
LOC_Os03g53670Os.9822.2.S1_a_at11/113+30728128..30732240YT521-B-like family protein, expressed
LOC_Os03g53680NANA3+30738028..30738258hypothetical protein
LOC_Os03g53690Os.55539.1.S1_at11/113+30738832..30739853NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g53700Os.14952.1.A1_at9/113+30742024..30747217PHD-finger family protein, expressed
LOC_Os03g53710Os.52647.1.S1_at11/113+30746891..30748683Aldose 1-epimerase family protein, expressed
LOC_Os03g53720Os.26432.1.S1_at11/113+30753769..30757824protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9822.2.S1_a_at--837--5191Chr03:30731829..30731853 (25 bp)
GCAATTAGCGCGATATATTTTCTGC
LOC_Os03g53670
Os.9822.2.S1_a_at--112--10391Chr03:30731846..30731870 (25 bp)
TTTTCTGCGTTAATTGCCACAGCCG
LOC_Os03g53670
Os.9822.2.S1_a_at--177--9211Chr03:30731860..30731884 (25 bp)
TGCCACAGCCGAGCAGTCAGATTGT
LOC_Os03g53670
Os.9822.2.S1_a_at--962--2231Chr03:30731887..30731911 (25 bp)
AAATTCTGAAGGTTCGCGGCGTGGC
LOC_Os03g53670
Os.9822.2.S1_a_at--965--3931Chr03:30731903..30731927 (25 bp)
CGGCGTGGCTGAGCGATAGCTACTT
LOC_Os03g53670
Os.9822.2.S1_a_at--656--9891Chr03:30731919..30731943 (25 bp)
TAGCTACTTGGGTTGGGACTTGGCA
LOC_Os03g53670
Os.9822.2.S1_a_at--328--2111Chr03:30731957..30731981 (25 bp)
ACAGACTTTCTATAGGCTTGGTGCC
LOC_Os03g53670
Os.9822.2.S1_a_at--172--6131Chr03:30731986..30732010 (25 bp)
GAGTGGGTCAGTTCTTACTTTGATT
LOC_Os03g53670
Os.9822.2.S1_a_at--40--2051Chr03:30732002..30732026 (25 bp)
ACTTTGATTTTAGCTCGTGTGACTG
LOC_Os03g53670
Os.9822.2.S1_a_at--1103--7451Chr03:30732018..30732042 (25 bp)
GTGTGACTGGTTTTTTGCGTCGTTA
LOC_Os03g53670
Os.9822.2.S1_a_at--598--9131Chr03:30732033..30732057 (25 bp)
TGCGTCGTTAGGTCTCATATATTAC
LOC_Os03g53670
Target Sequence 
GCAATTAGCGCGATATATTTTCTGCGTTAATTGCCACAGCCGAGCAGTCAGATTGTGCAAATTCTGAAGGTTCGCGGCGT
GGCTGAGCGATAGCTACTTGGGTTGGGACTTGGCAACTAAATTTCGTAACAGACTTTCTATAGGCTTGGTGCCTGGGGAG
TGGGTCAGTTCTTACTTTGATTTTAGCTCGTGTGACTGGTTTTTTGCGTCGTTAGGTCTCATATATTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9822.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis