Browse Element(s) Details


Os.9922.1.S1_s_at

Description gb:AU089803
DB_XREF= gi:7652241
DB_XREF=AU089803
CLONE=S16170
TID=Os.9922.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.9922 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_567795.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1601011/11acetyltransferase, GNAT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15990NANA8+9733162..9736373hypothetical protein
LOC_Os08g16000Os.52731.1.S1_at1/118+9740606..9747593retrotransposon protein, putative, unclassified
LOC_Os08g16010Os.9922.1.S1_s_at11/118+9751198..9754319acetyltransferase, GNAT family protein, expressed
LOC_Os08g16010OsAffx.29229.1.S1_at10/118+9751198..9754319acetyltransferase, GNAT family protein, expressed
LOC_Os08g16020OsAffx.5837.1.S1_at11/118+9765124..9766412hypothetical protein
LOC_Os08g16030OsAffx.29230.1.S1_at10/118+9773858..9775641expressed protein
LOC_Os08g16040NANA8+9777088..9777372hypothetical protein
LOC_Os08g16050Os.5486.1.S1_at11/118+9777747..9780579Tetraspanin family protein, expressed
LOC_Os08g16050OsAffx.29231.1.S1_at11/118+9777747..9780579Tetraspanin family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0008080molecular_functionN-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9922.1.S1_s_at--1039--2291Chr08:9753664..9753688 (25 bp)
AAATGGATTGGGTTATGCCCTGGTT
LOC_Os08g16010
Os.9922.1.S1_s_at--880--7912Chr08:9753668..9753692 (25 bp)
GGATTGGGTTATGCCCTGGTTGACA
LOC_Os08g16010
Os.9922.1.S1_s_at--36--8611Chr08:9753672..9753696 (25 bp)
TGGGTTATGCCCTGGTTGACAAGTC
LOC_Os08g16010
Os.9922.1.S1_s_at--26--7891Chr08:9753674..9753698 (25 bp)
GGTTATGCCCTGGTTGACAAGTCTA
LOC_Os08g16010
Os.9922.1.S1_s_at--344--6791Chr08:9753675..9753699 (25 bp)
GTTATGCCCTGGTTGACAAGTCTAA
LOC_Os08g16010
Os.9922.1.S1_s_at--134--2571Chr08:9753702..9754033 (25 bp)
AACTGGCTCGTGAATGGGGTATAAC
LOC_Os08g16010
Os.9922.1.S1_s_at--538--7691Chr08:9754026..9754049 (24 bp)
GGGTATAACTGATCTGTATGTCCAT
LOC_Os08g16010
Os.9922.1.S1_s_at--453--6891Chr08:9754027..9754051 (25 bp)
GTATAACTGATCTGTATGTCCATGT
LOC_Os08g16010
Os.9922.1.S1_s_at--619--9811Chr08:9754030..9754054 (25 bp)
TAACTGATCTGTATGTCCATGTTGC
LOC_Os08g16010
Os.9922.1.S1_s_at--624--1971Chr08:9754032..9754056 (25 bp)
ACTGATCTGTATGTCCATGTTGCCA
LOC_Os08g16010
Os.9922.1.S1_s_at--920--2291Chr08:9754089..9754113 (25 bp)
AAATGTGGATTTGTCTATGAGAGTG
LOC_Os08g16010
Target Sequence 
AAATGGATTGGGTTATGCCCTGGTTGACAAGTCTAANAAACTGGCTCGTGAATGGGGTATAACTGATCTGTATGTCCATG
TTGCCATCANCAATGAGGCAGCACANAAGCTGTNCAACAAATGTGGATTTGTCTATGAGAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9922.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis