Browse Element(s) Details


OsAffx.29229.1.S1_at

Description tigr:9636.m01607
TID=OsAffx.29229.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=acetyltransferase, GNAT family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1601010/11acetyltransferase, GNAT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15990NANA8+9733162..9736373hypothetical protein
LOC_Os08g16000Os.52731.1.S1_at1/118+9740606..9747593retrotransposon protein, putative, unclassified
LOC_Os08g16010Os.9922.1.S1_s_at11/118+9751198..9754319acetyltransferase, GNAT family protein, expressed
LOC_Os08g16010OsAffx.29229.1.S1_at10/118+9751198..9754319acetyltransferase, GNAT family protein, expressed
LOC_Os08g16020OsAffx.5837.1.S1_at11/118+9765124..9766412hypothetical protein
LOC_Os08g16030OsAffx.29230.1.S1_at10/118+9773858..9775641expressed protein
LOC_Os08g16040NANA8+9777088..9777372hypothetical protein
LOC_Os08g16050Os.5486.1.S1_at11/118+9777747..9780579Tetraspanin family protein, expressed
LOC_Os08g16050OsAffx.29231.1.S1_at11/118+9777747..9780579Tetraspanin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0008080molecular_functionN-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29229.1.S1_at--1152--8511Chr08:9752277..9752301 (25 bp)
TGGAACAGTCCCACTGTTGCCTTCT
LOC_Os08g16010
OsAffx.29229.1.S1_at--466--6691Chr08:9752292..9752316 (25 bp)
GTTGCCTTCTTTGGTGTCAGCAGAG
LOC_Os08g16010
OsAffx.29229.1.S1_at--275--8731Chr08:9752306..9752330 (25 bp)
TGTCAGCAGAGGAGCTTTGTTCTAC
LOC_Os08g16010
OsAffx.29229.1.S1_at--1135--8771NONE
TGTTCTACATGTAAGTTTGTTGAAG
NONE
OsAffx.29229.1.S1_at--937--4851Chr08:9753175..9753199 (25 bp)
GTTGGTAGTTTAGACCTTAATCAGT
LOC_Os08g16010
OsAffx.29229.1.S1_at--349--1751Chr08:9753188..9753212 (25 bp)
ACCTTAATCAGTGTCTTTGGCTACC
LOC_Os08g16010
OsAffx.29229.1.S1_at--798--10231Chr08:9753203..9753227 (25 bp)
TTTGGCTACCAGATGAACTGACCGG
LOC_Os08g16010
OsAffx.29229.1.S1_at--543--7671Chr08:9753598..9753621 (24 bp)
GGGTAAATGAGTCCAGCCATACAAG
LOC_Os08g16010
OsAffx.29229.1.S1_at--387--6111Chr08:9753605..9753629 (25 bp)
GAGTCCAGCCATACAAGGGCTTATC
LOC_Os08g16010
OsAffx.29229.1.S1_at--1084--7571Chr08:9753621..9753645 (25 bp)
GGGCTTATCTGAGCAATGTTTGTGT
LOC_Os08g16010
OsAffx.29229.1.S1_at--758--2211Chr08:9754060..9754084 (25 bp)
ACAATGAGGCAGCACAGAAGCTGTA
LOC_Os08g16010
Target Sequence 
TGGAACAGTCCCACTGTTGCCTTCTTTGGTGTCAGCAGAGGAGCTTTGTTCTACATGTAAGTTTGTTGAAGATGGAGAAG
AGAGAGTTGTAGTTGGTAGTTTAGACCTTAATCAGTGTCTTTGGCTACCAGATGAACTGACCGGAAAGAGGCCTGGGGTA
AATGAGTCCAGCCATACAAGGGCTTATCTGAGCAATGTTTGTGTTGCTAAGGAGCTTCAAAGAAATGGATTGGGTTATGC
CCTGGTTGACAAGTCTAAGAAACTGGCTCGTGAATGGGGTATAACTGATCTGTATGTCCATGTTGCCATCAACAATGAGG
CAGCACAGAAGCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29229.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis