Browse Element(s) Details


OsAffx.29230.1.S1_at

Description tigr:9636.m01609
TID=OsAffx.29230.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1603010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16010Os.9922.1.S1_s_at11/118+9751198..9754319acetyltransferase, GNAT family protein, expressed
LOC_Os08g16010OsAffx.29229.1.S1_at10/118+9751198..9754319acetyltransferase, GNAT family protein, expressed
LOC_Os08g16020OsAffx.5837.1.S1_at11/118+9765124..9766412hypothetical protein
LOC_Os08g16030OsAffx.29230.1.S1_at10/118+9773858..9775641expressed protein
LOC_Os08g16040NANA8+9777088..9777372hypothetical protein
LOC_Os08g16050Os.5486.1.S1_at11/118+9777747..9780579Tetraspanin family protein, expressed
LOC_Os08g16050OsAffx.29231.1.S1_at11/118+9777747..9780579Tetraspanin family protein, expressed
LOC_Os08g16060OsAffx.17019.1.S1_at11/118+9786247..9788173hypothetical protein
LOC_Os08g16070OsAffx.17020.1.S1_at11/118+9789087..9792238NB-ARC domain containing protein, expressed
LOC_Os08g16080Os.47463.1.S1_x_at3/118+9797946..9801646transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16080Os.14491.2.S1_x_at3/118+9797946..9801646transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29230.1.S1_at--741--7191Chr08:9774218..9774242 (25 bp)
GTCGTGTGCCTCAAGACGCAGGTCG
LOC_Os08g16030
OsAffx.29230.1.S1_at--1090--1571Chr08:9774243..9774267 (25 bp)
AGCTCATGCACAGCCTCTGCAAAGG
LOC_Os08g16030
OsAffx.29230.1.S1_at--400--2911Chr08:9774264..9774288 (25 bp)
AAGGATCCCAGCAGAAGCTGCATCT
LOC_Os08g16030
OsAffx.29230.1.S1_at--1124--231NONE
ATATATGATCCTGGCACAGCAGCTG
NONE
OsAffx.29230.1.S1_at--758--8151Chr08:9775277..9775301 (25 bp)
GGAAACCTCTAATTAACACACTTAT
LOC_Os08g16030
OsAffx.29230.1.S1_at--579--8311Chr08:9775361..9775385 (25 bp)
GGCTCAAGGAGCCAGCTTACTATAG
LOC_Os08g16030
OsAffx.29230.1.S1_at--932--6971Chr08:9775405..9775429 (25 bp)
GTACCACTGTAACTACTGTGCAAGT
LOC_Os08g16030
OsAffx.29230.1.S1_at--474--7951Chr08:9775448..9775472 (25 bp)
GGATCTTGGTTTTAGGTGTATCTCC
LOC_Os08g16030
OsAffx.29230.1.S1_at--854--7431Chr08:9775463..9775487 (25 bp)
GTGTATCTCCTCCTAGTGGCTAGGA
LOC_Os08g16030
OsAffx.29230.1.S1_at--1052--10771Chr08:9775525..9775549 (25 bp)
TTGATGTCGATTAACTACCTAGTGT
LOC_Os08g16030
OsAffx.29230.1.S1_at--242--8051Chr08:9775568..9775592 (25 bp)
GGAGATCAGATCAAGCCATATGCAT
LOC_Os08g16030
Target Sequence 
GTCGTGTGCCTCAAGACGCAGGTCGAGCTCATGCACAGCCTCTGCAAAGGATCCCAGCAGAAGCTGCATCTGCAGCTGGG
ATGAAAAATCAAATGCTGATATATGATCCTGGCACAGCAGCTGCCAGACTGCATACCTGCATGAGATGTGTGAGAGGAGT
TAATGGAAACCTCTAATTAACACACTTATGCACAGAAATCAAGAGGCCACTGGATGAATGGGAGATAGGCAGAGAACAGA
GCTCAAAAGGCTCAAGGAGCCAGCTTACTATAGTTAGTTAGTACCACTAGTAGTACCACTGTAACTACTGTGCAAGTACA
TGTCAGTGCAAAGATGGATCTTGGTTTTAGGTGTATCTCCTCCTAGTGGCTAGGATGAAGAAAGCCATAATCCATTTGAT
GAAAAAGAAGTTTTGATGTCGATTAACTACCTAGTGTTTGTTCTTAATTGGGGAGGGAGATCAGATCAAGCCATATGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29230.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis