Browse Element(s) Details


OsAffx.17020.1.S1_at

Description tigr:9636.m01614
TID=OsAffx.17020.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Hv1LRR2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1607011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16020OsAffx.5837.1.S1_at11/118+9765124..9766412hypothetical protein
LOC_Os08g16030OsAffx.29230.1.S1_at10/118+9773858..9775641expressed protein
LOC_Os08g16040NANA8+9777088..9777372hypothetical protein
LOC_Os08g16050Os.5486.1.S1_at11/118+9777747..9780579Tetraspanin family protein, expressed
LOC_Os08g16050OsAffx.29231.1.S1_at11/118+9777747..9780579Tetraspanin family protein, expressed
LOC_Os08g16060OsAffx.17019.1.S1_at11/118+9786247..9788173hypothetical protein
LOC_Os08g16070OsAffx.17020.1.S1_at11/118+9789087..9792238NB-ARC domain containing protein, expressed
LOC_Os08g16080Os.47463.1.S1_x_at3/118+9797946..9801646transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16080Os.14491.2.S1_x_at3/118+9797946..9801646transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16090Os.46053.2.S1_x_at9/118+9803917..9807149transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16100NANA8+9808727..9812059transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16110OsAffx.17021.1.S1_at11/118+9813896..9815277hypothetical protein
LOC_Os08g16110OsAffx.11470.1.S1_at1/118+9813896..9815277hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17020.1.S1_at--999--8771Chr08:9789721..9789745 (25 bp)
TGTTTCTTTCTGAGTGGTTTCCCAA
LOC_Os08g16070
OsAffx.17020.1.S1_at--269--10651Chr08:9789703..9789727 (25 bp)
TTCCCAACCTTAGGATACTCTTCTT
LOC_Os08g16070
OsAffx.17020.1.S1_at--433--2551Chr08:9789625..9789649 (25 bp)
AACTGCAACGGCTAACACTGGTTAA
LOC_Os08g16070
OsAffx.17020.1.S1_at--1043--2091Chr08:9789592..9789616 (25 bp)
ACATGAGGGACGTCCCGTTGGGCAT
LOC_Os08g16070
OsAffx.17020.1.S1_at--6--6811Chr08:9789507..9789531 (25 bp)
GTTATTGCAGTCCTCTTCGATTAAA
LOC_Os08g16070
OsAffx.17020.1.S1_at--751--2811Chr08:9789484..9789508 (25 bp)
AAGATTTTCGGTGGCAGCATTCTCT
LOC_Os08g16070
OsAffx.17020.1.S1_at--636--6511Chr08:9789437..9789461 (25 bp)
GATATCTAGCTATCTGCTGGTCCGA
LOC_Os08g16070
OsAffx.17020.1.S1_at--451--8471Chr08:9789420..9789444 (25 bp)
TGGTCCGACACTCTTACTAGACAGT
LOC_Os08g16070
OsAffx.17020.1.S1_at--1115--411Chr08:9789259..9789283 (25 bp)
ATCATCGATCCTTTTGCACCAAACA
LOC_Os08g16070
OsAffx.17020.1.S1_at--1093--3011Chr08:9789235..9789259 (25 bp)
AATGCTCAATTGAGGCTTGCCGTTT
LOC_Os08g16070
OsAffx.17020.1.S1_at--957--4491Chr08:9789217..9789241 (25 bp)
GCCGTTTTGGTGTCCGTTTCATGAA
LOC_Os08g16070
Target Sequence 
TGTTTCTTTCTGAGTGGTTTCCCAACCTTAGGATACTCTTCTTAAGAGACATGCGTAATCTGAAATGGCTGGTGGTTCAA
AAAGACGCCATGAAGAAACTGCAACGGCTAACACTGGTTAACCTCAAAAACATGAGGGACGTCCCGTTGGGCATTCAGTT
CCTCATGCCCCTGAAATATCTAGGCTTTCTGGAAATCACCAAGGAATTCCTTGAGTTATTGCAGTCCTCTTCGATTAAAG
ATTTTCGGTGGCAGCATTCTCTTCGAGACTCTGAGACCAGTGTTGATATCTAGCTATCTGCTGGTCCGACACTCTTACTA
GACAGTGAAAATGTTTTCGACAAGGACGGGATATATGGATTATTGGAGCATCATCGATCCTTTTGCACCAAACAATGCTC
AATTGAGGCTTGCCGTTTTGGTGTCCGTTTCATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17020.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis