Browse Element(s) Details


Os.5486.1.S1_at

Description gb:AK108529.1
DB_XREF= gi:32993738
TID=Os.5486.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5486 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-144-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-144-B12, full insert sequence.
FL= gb:AK108529.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1605011/11Tetraspanin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16010Os.9922.1.S1_s_at11/118+9751198..9754319acetyltransferase, GNAT family protein, expressed
LOC_Os08g16010OsAffx.29229.1.S1_at10/118+9751198..9754319acetyltransferase, GNAT family protein, expressed
LOC_Os08g16020OsAffx.5837.1.S1_at11/118+9765124..9766412hypothetical protein
LOC_Os08g16030OsAffx.29230.1.S1_at10/118+9773858..9775641expressed protein
LOC_Os08g16040NANA8+9777088..9777372hypothetical protein
LOC_Os08g16050Os.5486.1.S1_at11/118+9777747..9780579Tetraspanin family protein, expressed
LOC_Os08g16050OsAffx.29231.1.S1_at11/118+9777747..9780579Tetraspanin family protein, expressed
LOC_Os08g16060OsAffx.17019.1.S1_at11/118+9786247..9788173hypothetical protein
LOC_Os08g16070OsAffx.17020.1.S1_at11/118+9789087..9792238NB-ARC domain containing protein, expressed
LOC_Os08g16080Os.47463.1.S1_x_at3/118+9797946..9801646transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16080Os.14491.2.S1_x_at3/118+9797946..9801646transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16090Os.46053.2.S1_x_at9/118+9803917..9807149transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5486.1.S1_at--767--2131Chr08:9778311..9778335 (25 bp)
AAGGCCGGTGTTCTTGGCAACCTGA
LOC_Os08g16050
Os.5486.1.S1_at--959--4691Chr08:9778280..9778304 (25 bp)
GCTGGAAGAAGATCGCCTTCGTCAA
LOC_Os08g16050
Os.5486.1.S1_at--887--3931Chr08:9778188..9778212 (25 bp)
CGGCACAAGTACTCGCTGGTTGGGA
LOC_Os08g16050
Os.5486.1.S1_at--765--10711Chr08:9778100..9778124 (25 bp)
TTGCTTGCTGGTTGGCTACATGAAC
LOC_Os08g16050
Os.5486.1.S1_at--1139--611Chr08:9778048..9778072 (25 bp)
ATGCTTCAGTAAATATGCGCTTCCA
LOC_Os08g16050
Os.5486.1.S1_at--444--611Chr08:9778034..9778058 (25 bp)
ATGCGCTTCCATGTTATGAATGATC
LOC_Os08g16050
Os.5486.1.S1_at--516--10091Chr08:9777946..9777970 (25 bp)
TATGGCTGGACCTTTTAATAGTTAC
LOC_Os08g16050
Os.5486.1.S1_at--565--9871Chr08:9777924..9777948 (25 bp)
TACTTTTGGGTTTGGAACAGTCACA
LOC_Os08g16050
Os.5486.1.S1_at--243--7091Chr08:9777905..9777929 (25 bp)
GTCACAGAATGAGCCGGTCCAGAGT
LOC_Os08g16050
Os.5486.1.S1_at--708--7791Chr08:9777890..9777914 (25 bp)
GGTCCAGAGTTGAAGCCTCTGCTTT
LOC_Os08g16050
Os.5486.1.S1_at--914--4451Chr08:9777876..9777900 (25 bp)
GCCTCTGCTTTGTCAGCGTGTATAA
LOC_Os08g16050
Target Sequence 
AAGGCCGGTGTTCTTGGCAACCTGAGGAGCAGCTGGAAGAAGATCGCCTTCGTCAACGCCGCCTTCGTCGCCCTCCTCCT
CGTCGTCTACTCCCTCGGCTGCTGCGCGCTCCGGAACAACCGGCGGCACAAGTACTCGCTGGTTGGGAAATGATGAGGGT
TTTTGGTTTTTGCTCAGATGAAGGTTTTGTGGCGTGTGTGTTTGTGTTGTGTTGCTTGCTGGTTGGCTACATGAACAACT
GTAGTATTTCAGGAAAAAGATTTATGCTTCAGTAAATATGCGCTTCCATGTTATGAATGATCGCTAGTTTAGTAAATATG
TGTTGGTTGAGTTCTTGATTGAGATTTGAGAATCTCTCAGGAAAATATGGCTGGACCTTTTAATAGTTACTTTTGGGTTT
GGAACAGTCACAGAATGAGCCGGTCCAGAGTTGAAGCCTCTGCTTTGTCAGCGTGTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5486.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis