Browse Element(s) Details


OsAffx.17019.1.S1_at

Description tigr:9636.m01613
TID=OsAffx.17019.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1606011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16020OsAffx.5837.1.S1_at11/118+9765124..9766412hypothetical protein
LOC_Os08g16030OsAffx.29230.1.S1_at10/118+9773858..9775641expressed protein
LOC_Os08g16040NANA8+9777088..9777372hypothetical protein
LOC_Os08g16050Os.5486.1.S1_at11/118+9777747..9780579Tetraspanin family protein, expressed
LOC_Os08g16050OsAffx.29231.1.S1_at11/118+9777747..9780579Tetraspanin family protein, expressed
LOC_Os08g16060OsAffx.17019.1.S1_at11/118+9786247..9788173hypothetical protein
LOC_Os08g16070OsAffx.17020.1.S1_at11/118+9789087..9792238NB-ARC domain containing protein, expressed
LOC_Os08g16080Os.47463.1.S1_x_at3/118+9797946..9801646transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16080Os.14491.2.S1_x_at3/118+9797946..9801646transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16090Os.46053.2.S1_x_at9/118+9803917..9807149transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16100NANA8+9808727..9812059transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17019.1.S1_at--438--10732Chr08:9787605..9787629 (25 bp)
TTGCATGTGGTTGCATTGGCCGCAT
LOC_Os08g16060
OsAffx.17019.1.S1_at--4--5491Chr08:9787330..9787584 (25 bp)
GAACTTTGGGCGCAGACTCCAGAGC
LOC_Os08g16060
OsAffx.17019.1.S1_at--936--1371Chr08:9787310..9787334 (25 bp)
AGAGCGCTTTTGGTCCGACATGGCA
LOC_Os08g16060
OsAffx.17019.1.S1_at--26--5671Chr08:9787294..9787318 (25 bp)
GACATGGCAGTCTCGTCAGCATAAA
LOC_Os08g16060
OsAffx.17019.1.S1_at--891--8151Chr08:9786634..9786658 (25 bp)
GGAAAAGACGAGTATGCCCCTCAAA
LOC_Os08g16060
OsAffx.17019.1.S1_at--441--2411Chr08:9786612..9786636 (25 bp)
AAAACACTTCTTGGGCACCGAATCG
LOC_Os08g16060
OsAffx.17019.1.S1_at--988--9551Chr08:9786548..9786572 (25 bp)
TCTTCGAGCCGTGGACCGTGGACAA
LOC_Os08g16060
OsAffx.17019.1.S1_at--195--8531Chr08:9786530..9786554 (25 bp)
TGGACAACGCCAAGTCGCTGAGACT
LOC_Os08g16060
OsAffx.17019.1.S1_at--461--3071Chr08:9786498..9786522 (25 bp)
AATAATCGATCCCAATTCCCTATTC
LOC_Os08g16060
OsAffx.17019.1.S1_at--226--111Chr08:9786477..9786501 (25 bp)
ATTCGGCAATTCTTCTTGCATGCAT
LOC_Os08g16060
OsAffx.17019.1.S1_at--612--851Chr08:9786437..9786461 (25 bp)
ATGGCACGATGCGACTATGCAGTCC
LOC_Os08g16060
Target Sequence 
TTGCATGTGGTTGCATTGGCCGCATGCAAAATTCTGATTTTCGCAGAACTTTGGGCGCAGACTCCAGAGCGCTTTTGGTC
CGACATGGCAGTCTCGTCAGCATAAAAAAATATAAAAAGTCAAATGGTGAGAGAAATAATGTGGAAAAGACGAGTATGCC
CCTCAAAACACTTCTTGGGCACCGAATCGTGCCTCACCTCCGGAGGAGCAGCCGGGCCTCAACTCACCTCTTCGAGCCGT
GGACCGTGGACAACGCCAAGTCGCTGAGACTCGAGATGAATAATCGATCCCAATTCCCTATTCGGCAATTCTTCTTGCAT
GCATGGGGACGAGTCGACGATGGCACGATGCGACTATGCAGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17019.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis