Browse Element(s) Details


Os.9925.1.S1_at

Description gb:AK121941.1
DB_XREF= gi:37991564
TID=Os.9925.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9925 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-023-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107E19, full insert sequence.
FL= gb:AK059191.1 gb:AK121941.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5086010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50809NANA6+30747993..30748679hypothetical protein
LOC_Os06g50818Os.8311.1.S1_a_at3/116+30750239..30751666hypothetical protein
LOC_Os06g50830Os.55915.1.S1_at11/116+30753647..30757414bZIP transcription factor family protein, expressed
LOC_Os06g50840Os.50011.1.S1_at11/116+30761492..30767203zinc finger family protein, putative, expressed
LOC_Os06g50850OsAffx.16013.1.S1_at11/116+30767269..30769458expressed protein
LOC_Os06g50860Os.9925.1.S1_at10/116+30769704..30772815expressed protein
LOC_Os06g50870Os.53776.1.S1_at10/116+30773203..30775617DNL zinc finger family protein, expressed
LOC_Os06g50880Os.18869.1.S1_at11/116+30775910..30778654transducin family protein, putative, expressed
LOC_Os06g50890Os.10989.2.S1_at11/116+30778798..30783597RNA recognition motif family protein, expressed
LOC_Os06g50890Os.10989.1.S1_a_at11/116+30778798..30783597RNA recognition motif family protein, expressed
LOC_Os06g50910Os.48137.1.A1_at11/116+30796115..30814785Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910Os.49175.1.S1_at11/116+30796115..30814785Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910Os.24117.1.A1_at1/116+30796115..30814785Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910OsAffx.31869.4.S1_x_at1/116+30796115..30814785Phosphatidylinositol 3- and 4-kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9925.1.S1_at--669--7891Chr06:30770273..30770297 (25 bp)
GGTTCAACGAGGTCAATCTTTTCAC
LOC_Os06g50860
Os.9925.1.S1_at--688--3751Chr06:30770235..30770259 (25 bp)
CTCAGCTTTGGCTACGTGGTGTATA
LOC_Os06g50860
Os.9925.1.S1_at--13--10551Chr06:30770187..30770211 (25 bp)
TTCATGTTCCCAAACTGCGAGTACA
LOC_Os06g50860
Os.9925.1.S1_at--293--7931Chr06:30770055..30770079 (25 bp)
GGATTAGGGCTGTGGACTCCATACC
LOC_Os06g50860
Os.9925.1.S1_at--863--1431NONE
AGAACTTCGCCAGCAGGGCTAAGCT
NONE
Os.9925.1.S1_at--210--4731Chr06:30769971..30769995 (25 bp)
GCTGGGAAACTACCTGAACATGATT
LOC_Os06g50860
Os.9925.1.S1_at--830--31Chr06:30769941..30769965 (25 bp)
ATTGTGCAAAGTAGAGCCCTCGTTT
LOC_Os06g50860
Os.9925.1.S1_at--1087--6831Chr06:30769875..30769899 (25 bp)
GTTTCTCATGTTGATTCTGGTGCAT
LOC_Os06g50860
Os.9925.1.S1_at--858--1551Chr06:30769811..30769835 (25 bp)
AGCTTTGTGACTTCATTACTGTGCC
LOC_Os06g50860
Os.9925.1.S1_at--317--151Chr06:30769797..30769821 (25 bp)
ATTACTGTGCCAAATTCTGCGCCAA
LOC_Os06g50860
Os.9925.1.S1_at--670--9491Chr06:30769782..30769806 (25 bp)
TCTGCGCCAACACTGTAACTATACG
LOC_Os06g50860
Target Sequence 
GGTTCAACGAGGTCAATCTTTTCACGCCTCGCGATCAGCTCAGCTTTGGCTACGTGGTGTATAGGCTTGGAGATGCTCTT
AAATTCTTCATGTTCCCAAACTGCGAGTACAATTCGCTGTTCATTTTGCACAGACACACAAGGGAACACTCATCAAAAGT
CGAGTGGGCTAAAACAATCGATGAGATCGTGAAAAAGGGATTGAAGGAGAGCAAGGGAGGATTAGGGCTGTGGACTCCAT
ACCCTGCAGACCTGAGCTCTGTCGAACTCCCCAGTGTAAAAAGAACTTCGCCAGCAGGGCTAAGCTGGGAAACTACCTGA
ACATGATTTCGTGATTGTGCAAAGTAGAGCCCTCGTTTTTCTTTTCTTTTCTTTTCTTTTGATCAGAGGAAATTGTGTAG
TTTCTCATGTTGATTCTGGTGCATATGAAAAATGATGGCACTATAGGTTAGCACTTTACTTGTAGCTTTGTGACTTCATT
ACTGTGCCAAATTCTGCGCCAACACTGTAACTATACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9925.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis