Browse Element(s) Details


Os.9928.1.S1_at

Description gb:AK068424.1
DB_XREF= gi:32978442
TID=Os.9928.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9928 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 23830 putative PHD-finger protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013154F02, full insert sequence.
FL= gb:AK068424.1 gb:AY224545.1 gb:AB110188.1 gb:AY224464.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0498011/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04950OsAffx.12734.1.S1_at11/113+2366931..2369282subtilase family protein, putative
LOC_Os03g04960Os.17914.1.S1_at10/113+2375853..2379694Cysteinyl-tRNA synthetase, putative, expressed
LOC_Os03g04970Os.8911.1.S1_at11/113+2380125..2385850Chaperonin CPN60-1, mitochondrial precursor, putative, expressed
LOC_Os03g04970Os.54271.1.S1_at1/113+2380125..2385850Chaperonin CPN60-1, mitochondrial precursor, putative, expressed
LOC_Os03g04980Os.9928.1.S1_at11/113+2388972..2392542PHD-finger family protein, expressed
LOC_Os03g04980Os.9932.2.S1_x_at2/113+2388972..2392542PHD-finger family protein, expressed
LOC_Os03g04980Os.9932.1.S1_x_at1/113+2388972..2392542PHD-finger family protein, expressed
LOC_Os03g04990Os.18674.1.S1_at11/113+2394731..2398679expressed protein
LOC_Os03g05000Os.28943.1.S1_x_at1/113+2401005..2404238retrotransposon protein, putative, unclassified
LOC_Os03g05010NANA3+2405073..2407904retrotransposon protein, putative, unclassified
LOC_Os03g05020Os.14070.1.S1_s_at11/113+2412033..2428210PIROGI, putative, expressed
LOC_Os03g05020OsAffx.24968.1.S1_at11/113+2412033..2428210PIROGI, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9928.1.S1_at--539--5371Chr03:2391881..2391902 (22 bp)
GAAGACTGCTAAGGTGCCCACTGAG
LOC_Os03g04980
Os.9928.1.S1_at--111--8911Chr03:2391899..2391923 (25 bp)
TGAGCAACCAGCACCAGCCATAGAT
LOC_Os03g04980
Os.9928.1.S1_at--595--1431Chr03:2391926..2391950 (25 bp)
AGAACTGCCTGTGGATCCTAACGAA
LOC_Os03g04980
Os.9928.1.S1_at--916--2571Chr03:2391945..2391969 (25 bp)
AACGAACCAACATATTGCCTCTGCA
LOC_Os03g04980
Os.9928.1.S1_at--222--5151Chr03:2391967..2391991 (25 bp)
GCAACCAAGTCAGCTACGGAGAGAT
LOC_Os03g04980
Os.9928.1.S1_at--91--831Chr03:2392135..2392159 (25 bp)
ATGGTATCACTTTGGGTGCGTCGGC
LOC_Os03g04980
Os.9928.1.S1_at--88--8211Chr03:2392179..2392203 (25 bp)
GGAAGTGGTATTGCCCAAGTTGCAT
LOC_Os03g04980
Os.9928.1.S1_at--870--6291Chr03:2392343..2392367 (25 bp)
GATGATGTACATGTTACCCCTGTGT
LOC_Os03g04980
Os.9928.1.S1_at--556--6871Chr03:2392434..2392458 (25 bp)
GTATTGGTGTATCTTCATTGCCTTT
LOC_Os03g04980
Os.9928.1.S1_at--13--8751Chr03:2392478..2392502 (25 bp)
TGTAATTGTAATCTATCCCTCCCAT
LOC_Os03g04980
Os.9928.1.S1_at--1089--7471Chr03:2392503..2392527 (25 bp)
GTGGGCTTGATGCAATCTACACATA
LOC_Os03g04980
Target Sequence 
GAAGACTGCTAAGGTGCCCACTGAGCAACCAGCACCAGCCATAGATTTAGAACTGCCTGTGGATCCTAACGAACCAACAT
ATTGCCTCTGCAACCAAGTCAGCTACGGAGAGATGGTCGCATGCGACAATAATGATTGCAAGATCGAATGGTATCACTTT
GGGTGCGTCGGCGTGAAAGAGCATCCGAAGGGGAAGTGGTATTGCCCAAGTTGCATTGGATTCCAAAAGAAGCGAAAAGG
AAAGTGAAATGTGATCAACCCTTGATAGGAGGTAGCTTCTTGATGATAAGTGGTGATGGACGTGGGTAACAAAAACATAG
TAGCTGGTACTGTGAAATACTGTTGTAGCTTCAGTGATGATGTACATGTTACCCCTGTGTTACCGAGGAAATGCTGTAGG
CGTCTTAGAGTTAGGGACCAGTCAATCATGAAGAGCAGTTGTGCCTGTATTGGTGTATCTTCATTGCCTTTTTTTGGTGG
ATGTGTAGGTTGTAATTGTAATCTATCCCTCCCATGTGGGCTTGATGCAATCTACACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9928.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis