Browse Element(s) Details


Os.9930.1.S1_at

Description gb:CB670805
DB_XREF= gi:29674530
DB_XREF=OSJNEe04B07.r
CLONE=OSJNEe04B07
TID=Os.9930.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.9930 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3306011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33000Os.53440.1.S1_at10/112+19613375..19617976Glycosyl hydrolases family 17 protein, expressed
LOC_Os02g33010Os.7691.1.S1_s_at11/112+19617191..19622802expressed protein
LOC_Os02g33020OsAffx.24550.1.S1_at10/112+19626566..19629199SOUL heme-binding protein, expressed
LOC_Os02g33020Os.57395.1.S1_at1/112+19626566..19629199SOUL heme-binding protein, expressed
LOC_Os02g33030Os.39131.1.A1_at11/112+19630403..19632981Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os02g33030OsAffx.12324.1.S1_at11/112+19630403..19632981Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os02g33040OsAffx.12325.1.S1_at11/112+19636332..19636992hypothetical protein
LOC_Os02g33050NANA2+19637781..19638326hypothetical protein
LOC_Os02g33060Os.9930.1.S1_at11/112+19639144..19640211expressed protein
LOC_Os02g33060OsAffx.12326.1.S1_at11/112+19639144..19640211expressed protein
LOC_Os02g33070Os.9283.1.S1_at2/112+19643061..19643496hypothetical protein
LOC_Os02g33080Os.4756.1.S1_at11/112+19644045..19647588hydrolase, carbon-nitrogen family protein, expressed
LOC_Os02g33090OsAffx.2837.1.S1_at11/112+19648050..19648574expressed protein
LOC_Os02g33090OsAffx.2837.1.S1_x_at11/112+19648050..19648574expressed protein
LOC_Os02g33100OsAffx.12327.1.S1_at11/112+19654414..19654755hypothetical protein
LOC_Os02g33100OsAffx.12327.1.S1_x_at11/112+19654414..19654755hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9930.1.S1_at--553--9331Chr02:19639855..19639879 (25 bp)
TCGCCGTCGAGTTCAGAGGCAATTT
LOC_Os02g33060
Os.9930.1.S1_at--359--7351Chr02:19639923..19639947 (25 bp)
GTGCAACCACGTACGCGACGGCTGA
LOC_Os02g33060
Os.9930.1.S1_at--1140--3891Chr02:19639941..19639965 (25 bp)
CGGCTGACCGGCGAAACGTACAGTT
LOC_Os02g33060
Os.9930.1.S1_at--1129--10851Chr02:19639965..19639989 (25 bp)
TTGGTCAGGAATTGTGGGCCCACCT
LOC_Os02g33060
Os.9930.1.S1_at--677--1751Chr02:19639986..19640010 (25 bp)
ACCTCCTCGATGAATGTCTATCTGC
LOC_Os02g33060
Os.9930.1.S1_at--431--7151Chr02:19640001..19640025 (25 bp)
GTCTATCTGCTTTAAGTTCCCTGTG
LOC_Os02g33060
Os.9930.1.S1_at--1138--2811Chr02:19640014..19640038 (25 bp)
AAGTTCCCTGTGACTGTACGTGAAA
LOC_Os02g33060
Os.9930.1.S1_at--83--9911Chr02:19640045..19640069 (25 bp)
TACGGTGGCCGTTCAAATTGGAATT
LOC_Os02g33060
Os.9930.1.S1_at--624--71Chr02:19640067..19640091 (25 bp)
ATTCCAATGGGCCTCGATCCATATG
LOC_Os02g33060
Os.9930.1.S1_at--355--4391Chr02:19640097..19640121 (25 bp)
CCAATGTCACGCTCTGTTTTGTTCA
LOC_Os02g33060
Os.9930.1.S1_at--2--7331Chr02:19640128..19640152 (25 bp)
GTGCTAAATGTTTCCCAAATGTTGC
LOC_Os02g33060
Target Sequence 
TCGCCGTCGAGTTCAGAGGCAATTTGGCGAAGGCGACGCCGCGACGGCGGACGGCGGGGTCAGGGGTCGTGCAACCACGT
ACGCGACGGCTGACCGGCGAAACGTACAGTTTGGTCAGGAATTGTGGGCCCACCTCCTCGATGAATGTCTATCTGCTTTA
AGTTCCCTGTGACTGTACGTGAAAGCTGAGTACGGTGGCCGTTCAAATTGGAATTCCAATGGGCCTCGATCCATATGCCT
CTCCAATGTCACGCTCTGTTTTGTTCATCTTTTGTGCTAAATGTTTCCCAAATGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9930.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis