Browse Element(s) Details


OsAffx.10530.1.S1_at

Description gb:NM_184572.1
DB_XREF= gi:34896233
GEN=P0676G08.26
TID=OsAffx.10530.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0676G08.26 (P0676G08.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2908011/11retrotransposon protein, putative, unclassified
LOC_Os08g227902/11retrotransposon protein, putative, unclassified
LOC_Os09g036501/11transposon protein, putative, unclassified
LOC_Os12g216241/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29050OsAffx.15648.1.S1_at1/111+16587107..16593858hypothetical protein
LOC_Os01g29050OsAffx.22452.1.S1_x_at1/111+16587107..16593858hypothetical protein
LOC_Os01g29060Os.48015.1.A1_x_at1/111+16594371..16595182retrotransposon protein, putative, unclassified
LOC_Os01g29070Os.24831.3.S1_s_at11/111+16600740..16603480retrotransposon protein, putative, unclassified
LOC_Os01g29070Os.24831.3.S1_x_at11/111+16600740..16603480retrotransposon protein, putative, unclassified
LOC_Os01g29070Os.24831.1.S1_x_at4/111+16600740..16603480retrotransposon protein, putative, unclassified
LOC_Os01g29080OsAffx.10530.1.S1_at11/111+16610459..16611378retrotransposon protein, putative, unclassified
LOC_Os01g29090OsAffx.10529.1.S1_at11/111+16612056..16612451retrotransposon protein, putative, unclassified
LOC_Os01g29100OsAffx.23442.1.S1_at11/111+16612788..16615501retrotransposon protein, putative, unclassified
LOC_Os01g29110NANA1+16633378..16636648retrotransposon, putative, centromere-specific

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10530.1.S1_at--1127--4573Chr09:1833372..1833395 (24 bp)
GCGAATCTCAATTTGCCCTACAACA
LOC_Os09g03650
OsAffx.10530.1.S1_at--706--10271Chr01:16610698..16610782 (25 bp)
TTTGCCCTACAACACGATGAAGATG
LOC_Os01g29080
OsAffx.10530.1.S1_at--232--1791Chr01:16610804..16610828 (25 bp)
ACCGTCTCTGGCGATGTCAAGATTG
LOC_Os01g29080
OsAffx.10530.1.S1_at--31--3791Chr01:16610809..16610833 (25 bp)
CTCTGGCGATGTCAAGATTGCCCTG
LOC_Os01g29080
OsAffx.10530.1.S1_at--831--71Chr01:16610825..16610849 (25 bp)
ATTGCCCTGGCTTGTGCGGAGCAGT
LOC_Os01g29080
OsAffx.10530.1.S1_at--65--1531Chr01:16610844..16610868 (25 bp)
AGCAGTGCGCCGACAGCTTGCCTGC
LOC_Os01g29080
OsAffx.10530.1.S1_at--111--1751Chr01:16610939..16610963 (25 bp)
ACCTCGGGCGATGAGGTGCCCGTCA
LOC_Os01g29080
OsAffx.10530.1.S1_at--196--971Chr01:16610964..16611041 (25 bp)
AGGAGATCCCCTTGGAAAGCGTGCT
LOC_Os01g29080
OsAffx.10530.1.S1_at--282--551Chr01:16610969..16611046 (25 bp)
ATCCCCTTGGAAAGCGTGCTCGTCT
LOC_Os01g29080
OsAffx.10530.1.S1_at--1084--2331Chr01:16611060..16611084 (25 bp)
AAACTCCAACGTCTTCGCTTGGAAG
LOC_Os01g29080
OsAffx.10530.1.S1_at--454--4213Chr08:13572150..13572450 (25 bp)
CCAACGTCTTCGCTTGGAAGCCGTC
LOC_Os08g22790
Target Sequence 
GCGAATCTCAATTTGCCCTACAACACGATGAAGATGCCGGGCCCCAATGGCCCCATCACCGTCTCTGGCGATGTCAAGAT
TGCCCTGGCTTGTGCGGAGCAGTGCGCCGACAGCTTGCCTGCGGCCACCGAGCCGGAGGAGGCCGGCGGAGCCCCGGAAG
CCTCCGCGTCCCGCGCATCCAAGAAGCGCATCACCTCGGGCGATGAGGTGCCCGTCAAGGAGATCCCCTTGGAAAGCGTG
CTCGTCTCCTTCCTGCGGGCAAACTCCAACGTCTTCGCTTGGAAGCCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10530.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis