Browse Element(s) Details


OsAffx.10621.1.S1_at

Description tigr:9629.m02403
TID=OsAffx.10621.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2483011/11hypothetical protein
LOC_Os11g459601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24800Os.46012.2.S1_x_at8/111+13947150..13952611retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24800Os.46012.3.S1_x_at6/111+13947150..13952611retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24800Os.27088.1.A1_x_at4/111+13947150..13952611retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24800OsAffx.10222.1.S1_x_at1/111+13947150..13952611retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24810OsAffx.23374.1.S1_at11/111+13960445..13962019Cytochrome P450 family protein
LOC_Os01g24820OsAffx.23375.1.S1_at11/111+13962366..13966225NB-ARC domain containing protein
LOC_Os01g24830OsAffx.10621.1.S1_x_at11/111+13967568..13968161hypothetical protein
LOC_Os01g24830OsAffx.10621.1.S1_at11/111+13967568..13968161hypothetical protein
LOC_Os01g24840OsAffx.23376.2.S1_at11/111+13969219..13971192mariner transposase, putative
LOC_Os01g24840OsAffx.23376.1.S1_at11/111+13969219..13971192mariner transposase, putative
LOC_Os01g24849NANA1+13978325..13979411NA
LOC_Os01g24860NANA1+13981312..13986602retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24870NANA1+13987521..13989505hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10621.1.S1_at--217--7571Chr01:13967608..13967632 (25 bp)
GGGCCCGATGTTGGAGATGCTTTTC
LOC_Os01g24830
OsAffx.10621.1.S1_at--647--6332Chr11:27300178..27300202 (25 bp)
GATGCTTTTCTCTCACCCCGTACTA
LOC_Os11g45960
OsAffx.10621.1.S1_at--645--4171Chr01:13967686..13967710 (25 bp)
CGCCAGCGATGGCTGCGACGGATGG
LOC_Os01g24830
OsAffx.10621.1.S1_at--387--871Chr01:13967734..13967758 (25 bp)
ATGGCGGTGATGAGCCCGGATGGCA
LOC_Os01g24830
OsAffx.10621.1.S1_at--733--851Chr01:13967753..13967777 (25 bp)
ATGGCAGCGGATAGCGGCGGAGCCC
LOC_Os01g24830
OsAffx.10621.1.S1_at--417--4371Chr01:13967857..13967881 (25 bp)
CCACTGCCATGGGAAGGAGGCGCGT
LOC_Os01g24830
OsAffx.10621.1.S1_at--334--6391Chr01:13967939..13967963 (25 bp)
GATCGGCGGCAATGGGATGTCGGCA
LOC_Os01g24830
OsAffx.10621.1.S1_at--280--511Chr01:13967963..13967987 (25 bp)
ATCGCACCTCCCTGAGGAGAGGATT
LOC_Os01g24830
OsAffx.10621.1.S1_at--443--8891Chr01:13967975..13967999 (25 bp)
TGAGGAGAGGATTCCGGCATCGCTC
LOC_Os01g24830
OsAffx.10621.1.S1_at--20--571Chr01:13968098..13968122 (25 bp)
ATCCGGCGCAGCTTGCCATCTATTG
LOC_Os01g24830
OsAffx.10621.1.S1_at--692--1551Chr01:13968107..13968131 (25 bp)
AGCTTGCCATCTATTGCTGCCATGC
LOC_Os01g24830
Target Sequence 
GGGCCCGATGTTGGAGATGCTTTTCTCTCACCCCGTACTACCTGCTCGAGTCTGCTCCCACGCCATCTGCGCAACTACCG
CCAGCGATGGCTGCGACGGATGGGGACGGAGCCCAAGCGGCAGAGGATGGCGGTGATGAGCCCGGATGGCAGCGGATAGC
GGCGGAGCCCGAGCAGCGGTGGACGCGGCGACCAACCCAAGTCCCTCCGCCTATCACCGCCGTGTCCTTTCTCCCTCCGC
TCGTGCCTGCCACTGCCATGGGAAGGAGGCGCGTCGTCGCTCGCTCGCATCCTCCACCCGAGCTCGCCGTCAACGGCTCG
CCCGCGCTCAAGATCGGCGGCAATGGGATGTCGGCATCGCACCTCCCTGAGGAGAGGATTCCGGCATCGCTCCTCCCCAC
CTTCCACCTCCTCCCAACGCCGGTGCTGCCCCTCTCAACCTCCTCGTGCCGCCGCATGTGCCCCAGCCACATCCACCTCC
ACCCCCGGCCATCCGGCGCAGCTTGCCATCTATTGCTGCCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10621.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis