Browse Element(s) Details


OsAffx.10637.3.S1_s_at

Description gb:NM_192353.1
DB_XREF= gi:34911789
GEN=OJ1159_D09.2
TID=OsAffx.10637.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1159_D09.2 (OJ1159_D09.2), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1724011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g0414011/11hypothetical protein
LOC_Os01g4610011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g1612011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g1687011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g0697011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g3521011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g2334011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g2814011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g2612011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g0934011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g0893011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g0917011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g0557011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g0818011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g0880411/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g2972011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g0797011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g0296011/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g2677011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g0333011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g1333010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g0948010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g2831010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g3514010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g3719010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g2929010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g0592010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g259609/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g182209/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g272307/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g161107/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g316007/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g194506/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g352705/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g295904/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g216003/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g276603/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g431703/11hypothetical protein
LOC_Os01g554703/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g171402/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g241301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g358301/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17190NANA6+9960190..9962865retrotransposon protein, putative, unclassified
LOC_Os06g17200Os.24831.4.S1_x_at1/116+9965307..9966599retrotransposon protein, putative, unclassified
LOC_Os06g17210NANA6+9970300..9971520transposon protein, putative, unclassified
LOC_Os06g17220NANA6+9974239..9975881UDP-glucoronosyl/UDP-glucosyl transferase family protein, putative
LOC_Os06g17230OsAffx.32056.1.S1_at11/116+9977198..9982699transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17230OsAffx.32056.1.S1_x_at11/116+9977198..9982699transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17230OsAffx.30536.1.S1_x_at1/116+9977198..9982699transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17240OsAffx.10637.1.S1_s_at11/116+9984252..9987938transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17240OsAffx.10637.3.S1_s_at11/116+9984252..9987938transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17240OsAffx.10637.4.S1_s_at8/116+9984252..9987938transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17250NANA6+9990834..9992306glucosyltransferase, putative
LOC_Os06g17260OsAffx.27683.1.S1_at10/116+9995898..9997325UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g17270OsAffx.15471.1.S1_at11/116+9999558..9999839hypothetical protein
LOC_Os06g17280Os.53666.1.S1_s_at11/116+10002547..10005954PHD-finger family protein, expressed
LOC_Os06g17280Os.53666.1.S1_x_at11/116+10002547..10005954PHD-finger family protein, expressed
LOC_Os06g17290Os.17915.1.S1_at11/116+10012886..10016979phosphatidylinositol 3- and 4-kinase family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10637.3.S1_s_at--729--104334Chr12:22775307..22775329 (23 bp)
TTAATGGTCCCCTACCAGTTCACAG
LOC_Os12g37190
OsAffx.10637.3.S1_s_at--957--35330Chr12:22775654..22775678 (25 bp)
CATCCCAGAAGAAGTTATCCGTCAG
LOC_Os12g37190
OsAffx.10637.3.S1_s_at--647--28133Chr12:22775665..22775689 (25 bp)
AAGTTATCCGTCAGGACTGGCTGGC
LOC_Os12g37190
OsAffx.10637.3.S1_s_at--692--104333Chr12:15198249..15198272 (24 bp)
TTATCCGTCAGGACTGGCTGGCCGA
LOC_Os12g26120
OsAffx.10637.3.S1_s_at--268--71132Chr12:15198255..15198553 (25 bp)
GTCAGGACTGGCTGGCCGATCCCCG
LOC_Os12g26120
OsAffx.10637.3.S1_s_at--1043--20139Chr12:22776005..22776029 (25 bp)
ACTACTATCTTGAACGTGGCCGCTG
LOC_Os12g37190
OsAffx.10637.3.S1_s_at--387--98937Chr12:22776007..22776031 (25 bp)
TACTATCTTGAACGTGGCCGCTGAC
LOC_Os12g37190
OsAffx.10637.3.S1_s_at--884--101338Chr12:22776010..22776034 (25 bp)
TATCTTGAACGTGGCCGCTGACCTC
LOC_Os12g37190
OsAffx.10637.3.S1_s_at--187--7739Chr12:22776054..22776078 (25 bp)
ATGTCTGCAACGCAAGAGGTCTCTT
LOC_Os12g37190
OsAffx.10637.3.S1_s_at--730--13339Chr12:22776068..22776092 (25 bp)
AGAGGTCTCTTCTACGACAACCAGA
LOC_Os12g37190
OsAffx.10637.3.S1_s_at--426--338Chr12:22776102..22776126 (25 bp)
CAATGGACGACAAATTTAAACCTCT
LOC_Os12g37190
Target Sequence 
TTAATGGTCCCCTACCAGTTCACAGCACACAAGTACTACCGCAAAAGAGGTGGACCAGTACATATTCCATCCCAGAAGAA
GTTATCCGTCAGGACTGGCTGGCCGATCCCCGAAATCCCATATATTGCACAACGATTCAACCACACTACTATCTTGAACG
TGGCCGCTGACCTCTGCCGATTCATCCGTCGCGATGTCTGCAACGCAAGAGGTCTCTTCTACGACAACCAGAGTGAACTC
GCAATGGACGACAAATTTAAACCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10637.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis