Browse Element(s) Details


OsAffx.10665.1.S1_x_at

Description tigr:9637.m02957
TID=OsAffx.10665.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g415409/11hypothetical protein
LOC_Os08g168704/11hypothetical protein
LOC_Os09g342602/11hypothetical protein
LOC_Os01g229302/11hypothetical protein
LOC_Os07g050201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41480OsAffx.13286.1.S1_at11/113+23032440..23034859hypothetical protein
LOC_Os03g41480Os.45173.1.S1_x_at3/113+23032440..23034859hypothetical protein
LOC_Os03g41480OsAffx.11899.1.S1_at1/113+23032440..23034859hypothetical protein
LOC_Os03g41480OsAffx.25327.1.S1_at1/113+23032440..23034859hypothetical protein
LOC_Os03g41500OsAffx.13287.1.S1_at11/113+23037306..23037572hypothetical protein
LOC_Os03g41510Os.11464.1.S1_at11/113+23040880..23044899oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os03g41530Os.49515.2.S1_x_at11/113+23047775..23050994Single-strand binding protein family protein, expressed
LOC_Os03g41540OsAffx.10665.1.S1_x_at9/113+23055080..23056298hypothetical protein
LOC_Os03g41540Os.55476.1.S1_at1/113+23055080..23056298hypothetical protein
LOC_Os03g41540Os.55138.1.S1_x_at1/113+23055080..23056298hypothetical protein
LOC_Os03g41540OsAffx.10665.2.S1_at1/113+23055080..23056298hypothetical protein
LOC_Os03g41570NANA3+23073652..23077064transposon protein, putative, Mutator sub-class
LOC_Os03g41580OsAffx.29766.1.S1_x_at11/113+23077667..23078201GRF zinc finger family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10665.1.S1_x_at--887--695Chr05:11245837..11245861 (25 bp)
ATGGCTCGATTTCTTCAAAGGACTG
NONE
OsAffx.10665.1.S1_x_at--66--4814Chr05:11245840..11245864 (25 bp)
GCTCGATTTCTTCAAAGGACTGCCA
NONE
OsAffx.10665.1.S1_x_at--345--10314Chr05:11245846..11245870 (25 bp)
TTTCTTCAAAGGACTGCCATGCATG
NONE
OsAffx.10665.1.S1_x_at--889--9695Chr10:4771800..4771822 (22 bp)
TCAAAGGACTGCCATGCATGCATGT
NONE
OsAffx.10665.1.S1_x_at--518--7274Chr07:5920685..5920709 (25 bp)
GTCCATGCGAGGCTACCATGGCAAG
NONE
OsAffx.10665.1.S1_x_at--558--614Chr07:5920689..5920713 (25 bp)
ATGCGAGGCTACCATGGCAAGGAAT
NONE
OsAffx.10665.1.S1_x_at--38--8316Chr07:5920695..5920719 (25 bp)
GGCTACCATGGCAAGGAATCGGATT
NONE
OsAffx.10665.1.S1_x_at--1135--8198Chr07:5920704..5920728 (25 bp)
GGCAAGGAATCGGATTGGGACTCAC
NONE
OsAffx.10665.1.S1_x_at--811--2794Chr03:23055275..23055299 (25 bp)
AAGATGATGCCGATCTCCAAGATCG
LOC_Os03g41540
OsAffx.10665.1.S1_x_at--709--3832Chr05:11246082..11246106 (25 bp)
CTGCAACGGTCCACTGCACCCGGAA
NONE
OsAffx.10665.1.S1_x_at--804--3233Chr07:2211031..2211055 (25 bp)
CAACGGTCCACTGCACCCGGAACGG
LOC_Os07g05020
Target Sequence 
ATGGCTCGATTTCTTCAAAGGACTGCCATGCATGCATGTNTTTCNTGTTAGAGANGTCCATGCGAGGCTACCATGGCAAG
GAATCGGATTGGGACTCACNGGAGAGGGAGAAATCNAAGATGGAGCTCGGCGGCCGGAGTTGGAGAAGATGATGCCGATC
TCCAAGATCGNTNNNCCATTGGNTNGGGTACTTGNGGGTAAATGGAGAGGAGGTCGAGGTGAAGCNGATGGCGTGGTGGC
TCNGCCTGCAACGGTCCACTGCACCCGGAACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10665.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis