Browse Element(s) Details


OsAffx.10693.1.S1_at

Description gb:NM_183754.1
DB_XREF= gi:34894635
GEN=P0028G04.17
TID=OsAffx.10693.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0028G04.17 (P0028G04.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g054401/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05410OsAffx.29045.1.S1_at11/118+2846115..2851266hypothetical protein
LOC_Os08g05410OsAffx.29043.1.S1_at1/118+2846115..2851266hypothetical protein
LOC_Os08g05420NANA8+2853325..2858701transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g05430Os.47463.1.S1_x_at6/118+2860144..2865104transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g05430Os.14491.2.S1_x_at5/118+2860144..2865104transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g05440OsAffx.10693.1.S1_at1/118+2872609..2884290NB-ARC domain containing protein
LOC_Os08g05450Os.35344.3.S1_x_at11/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.2.S1_s_at11/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450Os.35344.18.S1_x_at10/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.1.S1_s_at10/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.5.S1_at10/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.3.S1_x_at9/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.5.S1_x_at9/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.2.S1_at8/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.31552.2.S1_at1/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05460OsAffx.5716.1.S1_at11/118+2898272..2900951F-box domain containing protein
LOC_Os08g05470Os.50607.1.S1_at11/118+2903293..2906194expressed protein
LOC_Os08g05470OsAffx.29046.1.S1_at11/118+2903293..2906194expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10693.1.S1_at--17--12180Chr12:21210884..21210928 (25 bp)
AGTTCAAATCCTTGAGGGAGCTCAC
NONE
OsAffx.10693.1.S1_at--582--8074Chr08:9113273..9113297 (25 bp)
GGAGCTCACAATGAGCCGGGTCTTT
NONE
OsAffx.10693.1.S1_at--349--103510Chr12:2290248..2290267 (20 bp)
TTTTCCAACCCTATCCTCGTGAGGT
NONE
OsAffx.10693.1.S1_at--804--9775Chr08:13082725..13082748 (24 bp)
TAATGGTATCTCTTCCCTTTCGGAG
NONE
OsAffx.10693.1.S1_at--266--6157Chr08:2876851..2876952 (24 bp)
GAGGTGTCCTCAACCACCAAGAGTA
LOC_Os08g05440
OsAffx.10693.1.S1_at--508--1991Chr01:12053558..12053582 (25 bp)
ACTCTCTCACACACATGAAATCCGA
NONE
OsAffx.10693.1.S1_at--671--5891Chr01:12053870..12053894 (25 bp)
GAGCTGCTACAGTACTTTCGGAATT
NONE
OsAffx.10693.1.S1_at--1057--2752Chr01:12053984..12054008 (25 bp)
AAGACATTTTAACTTCACTGCCAGT
NONE
OsAffx.10693.1.S1_at--528--9693Chr01:12053998..12054022 (25 bp)
TCACTGCCAGTTTCGGAAATTCCGA
NONE
OsAffx.10693.1.S1_at--928--10472Chr01:12054049..12054073 (25 bp)
TTACAGAACCGATTTTGGCTTCACG
NONE
OsAffx.10693.1.S1_at--223--8491Chr01:12054064..12054088 (25 bp)
TGGCTTCACGGCCATTTTCGGAAGT
NONE
Target Sequence 
AGTTCAAATCCTTGAGGGAGCTCACAATGAGCCGGGTCTTTTCCAACCCTATCCTCGTGAGGTTGCACAAATGCACTCCT
CCTTCCACTAATGGTATCTCTTCCCTTTCGGAGGTGTCCTCAACCACCAAGAGTAACAAATGCCACAAAGATTTCTTGGG
GATGAATCGAGTACTCAATAAATCTTCACGAAATCAACACCAAGCACTCAAACAAACTCAAATCAACCACTCTCTCACAC
ACATGAAATCCGAGATTGAAGATCGGTGGAGACAAAGAAAATTATTTTTCGGAGCTGCTACAGTACTTTCGGAATTTCCG
AAAAGTGCAGATTTCAGCAAAACTCAGCAGAAAAAAAGAATTTCAGAAATTCCAAAAATATTTCGGAAAAACCGAAAACT
TCCAGAAGACATTTTAACTTCACTGCCAGTTTCGGAAATTCCGAAAAAAATTTCAGACAAGTCCGAAAATTTACAGAACC
GATTTTGGCTTCACGGCCATTTTCGGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10693.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis