Browse Element(s) Details


OsAffx.1072.1.S1_at

Description gb:NM_190297.1
DB_XREF= gi:34907677
GEN=P0506A10.25
TID=OsAffx.1072.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0506A10.25 (P0506A10.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g148201/11expressed protein
LOC_Os01g567641/11H1flk, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14790NANA6+8388606..8389343hypothetical protein
LOC_Os06g14800OsAffx.4840.1.S1_at10/116+8393887..8396837hypothetical protein
LOC_Os06g14810Os.47521.1.A1_at9/116+8407348..8409309very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os06g14820OsAffx.1072.1.S1_at1/116+8413998..8415786expressed protein
LOC_Os06g14830OsAffx.13878.1.S1_at2/116+8430065..8431051hypothetical protein
LOC_Os06g14840OsAffx.29313.1.S1_at1/116+8433868..8435394transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1072.1.S1_at--1114--1393Chr12:20487378..20487402 (25 bp)
AGACTCCTTGCCTTATTTTCGGGAT
NONE
OsAffx.1072.1.S1_at--994--6111Chr01:39450278..39450301 (24 bp)
GAGTGATACATCTGGCGAGTGCCGA
NONE
OsAffx.1072.1.S1_at--503--8271NONE
TGGCGAGTGCCGAGTTACCAAAACT
NONE
OsAffx.1072.1.S1_at--1125--2751Chr01:39451228..39451252 (25 bp)
AAGACTCATAGTCGCAGCCGGCCAA
NONE
OsAffx.1072.1.S1_at--100--2853Chr12:20490533..20490557 (25 bp)
AAGTCAGTTCAAGCTGCTTCGCACT
NONE
OsAffx.1072.1.S1_at--674--1913Chr12:20490568..20490592 (25 bp)
ACGGATTCAAGTTGTCTGCAGTCGA
NONE
OsAffx.1072.1.S1_at--309--9054Chr12:20490584..20490608 (25 bp)
TGCAGTCGACACAAGCTTGCCGCTG
NONE
OsAffx.1072.1.S1_at--135--2696Chr12:20490626..20490650 (25 bp)
AAGCTCCTCGTTCCATCATGAAAGA
NONE
OsAffx.1072.1.S1_at--552--7714Chr12:20490729..20490753 (25 bp)
GGGTGTGCATGTAACTTAGCCGTCA
NONE
OsAffx.1072.1.S1_at--894--1371Chr01:39451485..39451573 (25 bp)
AGAGCGGGCTGCATATGGACCAGAA
NONE
OsAffx.1072.1.S1_at--550--2691Chr01:39451575..39451599 (25 bp)
AAGCTCTAGGACTTTCGGAGGAGAA
NONE
Target Sequence 
AGACTCCTTGCCTTATTTTCGGGATGAGTGATACATCTGGCGAGTGCCGAGTTACCAAAACTCGAAGTATCTATACTGCG
GCTGACAGCGAATTATTTTTAGCTGTCCTGCCTTTCCTTTCGGAAATGCCAGAACAGGTAGTTTCAACTGTGGAGCCCTT
CCTTTCTACAATCCCGGAACAGAAAAGGAAGACTCATAGTCGCAGCCGGCCAATGGCTAGAACAAGTCAGTTCAAGCTGC
TTCGCACTACCGTTGCTAACGGATTCAAGTTGTCTGCAGTCGACACAAGCTTGCCGCTGCTGCCGCAAATCAACTCAAGC
TCCTCGTTCCATCATGAAAGAGTAAAGCCCCAAAATGGGTACACAGCTAAACATGAGAGCAAGCAGACTATTATACGTGT
AACTAAGCCTTCAAAATGGGGGTGTGCATGTAACTTAGCCGTCATAGAGCGGGCTGCATATGGACCAGAAAAAGCTCTAG
GACTTTCGGAGGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis