Browse Element(s) Details


OsAffx.10809.1.S1_at

Description tigr:9629.m00453
TID=OsAffx.10809.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0530011/11hypothetical protein
LOC_Os06g027901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05250OsAffx.23023.1.S1_at5/111+2471358..2471958expressed protein
LOC_Os01g05260OsAffx.10914.1.S1_at11/111+2474878..2476803hypothetical protein
LOC_Os01g05280OsAffx.23018.1.S1_at11/111+2484189..2484788hypothetical protein
LOC_Os01g05290OsAffx.10570.1.S1_at1/111+2485158..2485421hypothetical protein
LOC_Os01g05300OsAffx.10809.1.S1_at11/111+2495071..2495542hypothetical protein
LOC_Os01g05310OsAffx.23023.1.S1_at11/111+2497152..2497939hypothetical protein
LOC_Os01g05320OsAffx.19542.3.S1_x_at7/111+2501190..2507505retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05320OsAffx.9949.1.S1_at1/111+2501190..2507505retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05320OsAffx.21754.1.S1_x_at1/111+2501190..2507505retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05330OsAffx.23028.1.S1_at11/111+2511480..2512484expressed protein
LOC_Os01g05340OsAffx.1939.1.S1_at11/111+2517186..2518912hypothetical protein
LOC_Os01g05340OsAffx.30396.1.S1_x_at1/111+2517186..2518912hypothetical protein
LOC_Os01g05340OsAffx.30396.1.S1_at1/111+2517186..2518912hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10809.1.S1_at--759--1851Chr01:2495488..2495512 (25 bp)
ACGAGATTACTATACACCTGTTGGT
LOC_Os01g05300
OsAffx.10809.1.S1_at--432--6051Chr01:2495486..2495510 (25 bp)
GAGATTACTATACACCTGTTGGTGG
LOC_Os01g05300
OsAffx.10809.1.S1_at--410--2171Chr01:2495475..2495499 (25 bp)
ACACCTGTTGGTGGAATGCAATGCA
LOC_Os01g05300
OsAffx.10809.1.S1_at--316--5271Chr01:2495462..2495486 (25 bp)
GAATGCAATGCAGATACACCAAGAA
LOC_Os01g05300
OsAffx.10809.1.S1_at--673--5173Chr06:1016404..1016424 (21 bp)
GCAATGCAGATACACCAAGAAAATA
LOC_Os06g02790
OsAffx.10809.1.S1_at--1126--571Chr01:2495429..2495453 (25 bp)
ATGCCATTGCCAGTTGGATAACCTG
LOC_Os01g05300
OsAffx.10809.1.S1_at--818--4431Chr01:2495427..2495451 (25 bp)
GCCATTGCCAGTTGGATAACCTGTG
LOC_Os01g05300
OsAffx.10809.1.S1_at--520--10691Chr01:2495423..2495447 (25 bp)
TTGCCAGTTGGATAACCTGTGCATC
LOC_Os01g05300
OsAffx.10809.1.S1_at--837--4411Chr01:2495421..2495445 (25 bp)
GCCAGTTGGATAACCTGTGCATCCA
LOC_Os01g05300
OsAffx.10809.1.S1_at--1023--6611Chr01:2495417..2495441 (25 bp)
GTTGGATAACCTGTGCATCCATGGC
LOC_Os01g05300
OsAffx.10809.1.S1_at--795--7951Chr01:2495414..2495438 (25 bp)
GGATAACCTGTGCATCCATGGCGCC
LOC_Os01g05300
Target Sequence 
ACGAGATTACTATACACCTGTTGGTGGAATGCAATGCAGATACACCAAGAAAATATGGGATGCCATTGCCAGTTGGATAA
CCTGTGCATCCATGGCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10809.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis