Browse Element(s) Details


OsAffx.23028.1.S1_at

Description tigr:9629.m00456
TID=OsAffx.23028.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0533011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05300OsAffx.10809.1.S1_at11/111+2495071..2495542hypothetical protein
LOC_Os01g05310OsAffx.23023.1.S1_at11/111+2497152..2497939hypothetical protein
LOC_Os01g05320OsAffx.19542.3.S1_x_at7/111+2501190..2507505retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05320OsAffx.9949.1.S1_at1/111+2501190..2507505retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05320OsAffx.21754.1.S1_x_at1/111+2501190..2507505retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05330OsAffx.23028.1.S1_at11/111+2511480..2512484expressed protein
LOC_Os01g05340OsAffx.1939.1.S1_at11/111+2517186..2518912hypothetical protein
LOC_Os01g05340OsAffx.30396.1.S1_x_at1/111+2517186..2518912hypothetical protein
LOC_Os01g05340OsAffx.30396.1.S1_at1/111+2517186..2518912hypothetical protein
LOC_Os01g05350OsAffx.22782.2.S1_at10/111+2526191..2529277hypothetical protein
LOC_Os01g05350Os.18362.1.S1_at1/111+2526191..2529277hypothetical protein
LOC_Os01g05350Os.56255.1.S1_x_at1/111+2526191..2529277hypothetical protein
LOC_Os01g05350Os.56255.1.S1_at1/111+2526191..2529277hypothetical protein
LOC_Os01g05350OsAffx.23361.2.S1_x_at1/111+2526191..2529277hypothetical protein
LOC_Os01g05360OsAffx.1940.1.S1_at11/111+2532102..2532482hypothetical protein
LOC_Os01g05370NANA1+2532627..2537565retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23028.1.S1_at--553--3511Chr01:2511927..2511951 (25 bp)
CATGTGGTCCACTTAGTTTCTAATA
LOC_Os01g05330
OsAffx.23028.1.S1_at--1079--6231Chr01:2512035..2512059 (25 bp)
GATGGATCCTTTGACTTGAATTCAG
LOC_Os01g05330
OsAffx.23028.1.S1_at--450--9551Chr01:2512104..2512128 (25 bp)
TCTATTTTTTCTGCTTCCGGATTCA
LOC_Os01g05330
OsAffx.23028.1.S1_at--155--9291Chr01:2512119..2512143 (25 bp)
TCCGGATTCATTGAGCGCTGCAGCA
LOC_Os01g05330
OsAffx.23028.1.S1_at--80--171Chr01:2512182..2512206 (25 bp)
ATTATTATGGCCCTTCAGTGGACCT
LOC_Os01g05330
OsAffx.23028.1.S1_at--1032--1091Chr01:2512198..2512222 (25 bp)
AGTGGACCTTGTTGCCCATCATTGT
LOC_Os01g05330
OsAffx.23028.1.S1_at--1051--3551Chr01:2512214..2512238 (25 bp)
CATCATTGTGGAGTCTGGTTGCTTG
LOC_Os01g05330
OsAffx.23028.1.S1_at--1122--971Chr01:2512270..2512294 (25 bp)
AGGAGAGGTCTCAGTTTGCTCATCT
LOC_Os01g05330
OsAffx.23028.1.S1_at--470--10271Chr01:2512284..2512308 (25 bp)
TTTGCTCATCTGATCCGGGACATAG
LOC_Os01g05330
OsAffx.23028.1.S1_at--809--1431Chr01:2512363..2512387 (25 bp)
AGAACTGCATTAGCCATTTCCTAGC
LOC_Os01g05330
OsAffx.23028.1.S1_at--313--351Chr01:2512390..2512414 (25 bp)
ATAAGGCCCGTGCTAAACTCTGTAC
LOC_Os01g05330
Target Sequence 
CATGTGGTCCACTTAGTTTCTAATAAGTCCAAACTAGCTAAGAAGAATCAAGGGTGCAGCCCTCGTCGCTGGGAGAAACC
ACACGCGGGGTGGATGAAGCTGAATGTGGATGGATCCTTTGACTTGAATTCAGGTTCAGGTGGTTTAGGTGTGATGCTAA
GGAATAGTTCTGTCAAATCTATTTTTTCTGCTTCCGGATTCATTGAGCGCTGCAGCAGCCCATTGGAAGCTGAACTGATA
GCCTGCAAAGAGGGCATTATTATGGCCCTTCAGTGGACCTTGTTGCCCATCATTGTGGAGTCTGGTTGCTTGGTGGCGGT
GAATATGATCCAGGCTGCGAAAGAGGAGAGGTCTCAGTTTGCTCATCTGATCCGGGACATAGGGAATTTGATCTCAGGAG
ACAGGGAAGTCTTAATCCAGAAAATTTATCGCACTCAGAACTGCATTAGCCATTTCCTAGCAAATAAGGCCCGTGCTAAA
CTCTGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23028.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis