Browse Element(s) Details


OsAffx.1940.1.S1_at

Description tigr:9629.m00459
TID=OsAffx.1940.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0536011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05320OsAffx.19542.3.S1_x_at7/111+2501190..2507505retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05320OsAffx.9949.1.S1_at1/111+2501190..2507505retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05320OsAffx.21754.1.S1_x_at1/111+2501190..2507505retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05330OsAffx.23028.1.S1_at11/111+2511480..2512484expressed protein
LOC_Os01g05340OsAffx.1939.1.S1_at11/111+2517186..2518912hypothetical protein
LOC_Os01g05340OsAffx.30396.1.S1_x_at1/111+2517186..2518912hypothetical protein
LOC_Os01g05340OsAffx.30396.1.S1_at1/111+2517186..2518912hypothetical protein
LOC_Os01g05350OsAffx.22782.2.S1_at10/111+2526191..2529277hypothetical protein
LOC_Os01g05350Os.18362.1.S1_at1/111+2526191..2529277hypothetical protein
LOC_Os01g05350Os.56255.1.S1_x_at1/111+2526191..2529277hypothetical protein
LOC_Os01g05350Os.56255.1.S1_at1/111+2526191..2529277hypothetical protein
LOC_Os01g05350OsAffx.23361.2.S1_x_at1/111+2526191..2529277hypothetical protein
LOC_Os01g05360OsAffx.1940.1.S1_at11/111+2532102..2532482hypothetical protein
LOC_Os01g05370NANA1+2532627..2537565retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05380Os.51592.1.S1_at10/111+2538815..2539230hypothetical protein
LOC_Os01g05390OsAffx.10916.1.S1_at11/111+2544717..2545100hypothetical protein
LOC_Os01g05400OsAffx.10917.1.S1_at11/111+2547748..2548923hypothetical protein
LOC_Os01g05410OsAffx.22782.1.S1_x_at11/111+2550422..2550823hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1940.1.S1_at--141--4591Chr01:2532133..2532157 (25 bp)
GCGCAGCGGACGAAGCCCAAGACGC
LOC_Os01g05360
OsAffx.1940.1.S1_at--718--1571Chr01:2532190..2532214 (25 bp)
AGCTCAATGGAGTGGGCTTCGTCAC
LOC_Os01g05360
OsAffx.1940.1.S1_at--307--1111Chr01:2532200..2532224 (25 bp)
AGTGGGCTTCGTCACTCTCGCCATG
LOC_Os01g05360
OsAffx.1940.1.S1_at--1118--9491Chr01:2532215..2532239 (25 bp)
TCTCGCCATGGCTGTAAGTACACTT
LOC_Os01g05360
OsAffx.1940.1.S1_at--7--1171Chr01:2532231..2532255 (25 bp)
AGTACACTTGTTCACAAGCCAGCTG
LOC_Os01g05360
OsAffx.1940.1.S1_at--624--2651Chr01:2532246..2532270 (25 bp)
AAGCCAGCTGATCATGGCGAGCTCT
LOC_Os01g05360
OsAffx.1940.1.S1_at--304--8851Chr01:2532254..2532278 (25 bp)
TGATCATGGCGAGCTCTTCCAGGGC
LOC_Os01g05360
OsAffx.1940.1.S1_at--833--4451Chr01:2532288..2532312 (25 bp)
GCCTACTACCTTACGCTCATGGTTA
LOC_Os01g05360
OsAffx.1940.1.S1_at--708--10471Chr01:2532298..2532322 (25 bp)
TTACGCTCATGGTTATCTTCCTCGC
LOC_Os01g05360
OsAffx.1940.1.S1_at--72--7191Chr01:2532336..2532360 (25 bp)
GTCTGGACCGCATTGTGGGTGTCCA
LOC_Os01g05360
OsAffx.1940.1.S1_at--657--10831Chr01:2532348..2532372 (25 bp)
TTGTGGGTGTCCAACGCCGGCGAAT
LOC_Os01g05360
Target Sequence 
GCGCAGCGGACGAAGCCCAAGACGCCGGCGAAGAGGAGCTCGGCTCCGTGAGGAAGAAGCTCAATGGAGTGGGCTTCGTC
ACTCTCGCCATGGCTGTAAGTACACTTGTTCACAAGCCAGCTGATCATGGCGAGCTCTTCCAGGGCCACGCAATCGCCTA
CTACCTTACGCTCATGGTTATCTTCCTCGCCGGAGTGGTGGAGGTCTGGACCGCATTGTGGGTGTCCAACGCCGGCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1940.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis