Browse Element(s) Details


OsAffx.30396.1.S1_at

Description tigr:9638.m01072
TID=OsAffx.30396.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g053401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05300OsAffx.10809.1.S1_at11/111+2495071..2495542hypothetical protein
LOC_Os01g05310OsAffx.23023.1.S1_at11/111+2497152..2497939hypothetical protein
LOC_Os01g05320OsAffx.19542.3.S1_x_at7/111+2501190..2507505retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05320OsAffx.9949.1.S1_at1/111+2501190..2507505retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05320OsAffx.21754.1.S1_x_at1/111+2501190..2507505retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05330OsAffx.23028.1.S1_at11/111+2511480..2512484expressed protein
LOC_Os01g05340OsAffx.1939.1.S1_at11/111+2517186..2518912hypothetical protein
LOC_Os01g05340OsAffx.30396.1.S1_x_at1/111+2517186..2518912hypothetical protein
LOC_Os01g05340OsAffx.30396.1.S1_at1/111+2517186..2518912hypothetical protein
LOC_Os01g05350OsAffx.22782.2.S1_at10/111+2526191..2529277hypothetical protein
LOC_Os01g05350Os.18362.1.S1_at1/111+2526191..2529277hypothetical protein
LOC_Os01g05350Os.56255.1.S1_x_at1/111+2526191..2529277hypothetical protein
LOC_Os01g05350Os.56255.1.S1_at1/111+2526191..2529277hypothetical protein
LOC_Os01g05350OsAffx.23361.2.S1_x_at1/111+2526191..2529277hypothetical protein
LOC_Os01g05360OsAffx.1940.1.S1_at11/111+2532102..2532482hypothetical protein
LOC_Os01g05370NANA1+2532627..2537565retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05380Os.51592.1.S1_at10/111+2538815..2539230hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30396.1.S1_at--105--3991NONE
CGGGAGCACGATGGGACCTCAGTAC
NONE
OsAffx.30396.1.S1_at--185--8071Chr10:6364459..6364483 (25 bp)
GGAGCACGATGGGACCTCAGTACAA
NONE
OsAffx.30396.1.S1_at--785--5091Chr10:6364462..6364486 (25 bp)
GCACGATGGGACCTCAGTACAAGCA
NONE
OsAffx.30396.1.S1_at--123--6252Chr12:7455003..7455023 (21 bp)
GATGGGACCTCAGTACAAGCATGGA
NONE
OsAffx.30396.1.S1_at--899--8632Chr12:7455003..7455025 (23 bp)
TGGGACCTCAGTACAAGCATGGAGA
NONE
OsAffx.30396.1.S1_at--866--5832Chr12:7455004..7455028 (25 bp)
GACCTCAGTACAAGCATGGAGAGGA
NONE
OsAffx.30396.1.S1_at--863--8452Chr12:7455046..7455070 (25 bp)
TGGCCTCACCGGCTCTGGAAGAGTC
NONE
OsAffx.30396.1.S1_at--472--3752Chr12:7455050..7455074 (25 bp)
CTCACCGGCTCTGGAAGAGTCTGGT
NONE
OsAffx.30396.1.S1_at--603--4812Chr12:7455057..7455081 (25 bp)
GCTCTGGAAGAGTCTGGTGGCGCGA
NONE
OsAffx.30396.1.S1_at--263--7193Chr10:6364535..6364559 (25 bp)
GTCTGGTGGCGCGAGGAGACGACGA
NONE
OsAffx.30396.1.S1_at--234--1871Chr10:6364556..6364580 (25 bp)
ACGACCGGTGGCCTGCAGCGACAGA
NONE
Target Sequence 
CGGGAGCACGATGGGACCTCAGTACAAGCATGGAGAGGAGGGGAAAAACAAGGAGATGGCCTCACCGGCTCTGGAAGAGT
CTGGTGGCGCGAGGAGACGACGACCGGTGGCCTGCAGCGACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30396.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis