Browse Element(s) Details


OsAffx.10905.1.S1_at

Description tigr:9632.m04776
TID=OsAffx.10905.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to mitochondrial import inner membrane translocase subunit tim13. (mouse-ear cress
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4922011/11Tim10/DDP family zinc finger containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49170OsAffx.4126.1.S1_at11/114+29104906..29105424Zinc finger, C3HC4 type family protein
LOC_Os04g49180OsAffx.14337.2.A1_at4/114+29106794..29107138hypothetical protein
LOC_Os04g49194Os.17316.1.S1_at11/114+29112473..29119170oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g49210Os.7095.1.S1_at3/114+29120377..29122074oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g49220OsAffx.10905.1.S1_at11/114+29129690..29135033Tim10/DDP family zinc finger containing protein
LOC_Os04g49220Os.13772.1.S1_at9/114+29129690..29135033Tim10/DDP family zinc finger containing protein
LOC_Os04g49230OsAffx.26536.1.S1_at11/114+29147940..29148821B3 DNA binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10905.1.S1_at--829--5791Chr04:29130196..29130220 (25 bp)
GACGCAGCATGTCCTGGGCGGAGGA
LOC_Os04g49220
OsAffx.10905.1.S1_at--497--8011Chr04:29130177..29130201 (25 bp)
GGAGGACGGTAGATCCAACGCCCTG
LOC_Os04g49220
OsAffx.10905.1.S1_at--391--1291Chr04:29130167..29130191 (25 bp)
AGATCCAACGCCCTGTGGCCGGATC
LOC_Os04g49220
OsAffx.10905.1.S1_at--155--9791Chr04:29130012..29130036 (25 bp)
TAAGTGTGGCGTGGCCTGGGCAGAC
LOC_Os04g49220
OsAffx.10905.1.S1_at--574--1071Chr04:29129967..29129991 (25 bp)
AGGGCGTGGCCAGAACATGGCCCAT
LOC_Os04g49220
OsAffx.10905.1.S1_at--1146--2491Chr04:29129954..29129978 (25 bp)
AACATGGCCCATGGTCGGCGTGATG
LOC_Os04g49220
OsAffx.10905.1.S1_at--583--4251Chr04:29129890..29129914 (25 bp)
CCGGAGGCTGCAGTCTGGCCATTTG
LOC_Os04g49220
OsAffx.10905.1.S1_at--687--7011Chr04:29129841..29129865 (25 bp)
GTACATGGCAGTTCGTATGCCCCGA
LOC_Os04g49220
OsAffx.10905.1.S1_at--523--9391Chr04:29129829..29129853 (25 bp)
TCGTATGCCCCGAGGCCGGGTGTAA
LOC_Os04g49220
OsAffx.10905.1.S1_at--903--3451Chr04:29129792..29129816 (25 bp)
CAGTGCTAACGGAGCTAGCGGCGGT
LOC_Os04g49220
OsAffx.10905.1.S1_at--216--9031Chr04:29129743..29129767 (25 bp)
TGCACCCTCACTCTTCTTGGAGTTC
LOC_Os04g49220
Target Sequence 
GACGCAGCATGTCCTGGGCGGAGGACGGTAGATCCAACGCCCTGTGGCCGGATCTGGCCGCCCCATGCTCGGCGCGATGG
CCGGGGCTCGGAGGCGGCGCGTATGTCGCGGCACGGCGCATGCGCCGGTGGGGCGCTGCGGCCCAGCGCACGGCGGCCAT
CTGCGGTCGGGCGACGGCCTAGGGTAAGTGTGGCGTGGCCTGGGCAGACGGCGGCGGTGGCCTTCCCGGAGGGCGTGGCC
AGAACATGGCCCATGGTCGGCGTGATGCGGCATGGGCGGTCGGACGGCAACGGTGAGGTGGTCCGCCCGGAGGCTGCAGT
CTGGCCATTTGGTGCAGCGGTGGTGGCGTTGGGGTGTACATGGCAGTTCGTATGCCCCGAGGCCGGGTGTAAAGGGAGTG
ATGGCAGTGCTAACGGAGCTAGCGGCGGTGGGTCGTCTTCCTCGTTACCGGTCTGCACCCTCACTCTTCTTGGAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10905.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis