Browse Element(s) Details


OsAffx.10906.1.S1_at

Description tigr:9635.m02895
TID=OsAffx.10906.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2970011/11hypothetical protein
LOC_Os12g220202/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29640Os.22559.1.S1_at11/117+17424704..17427721expressed protein
LOC_Os07g29640Os.38994.1.A1_at11/117+17424704..17427721expressed protein
LOC_Os07g29650Os.35344.3.S1_x_at7/117+17429556..17432042transposon protein, putative, Mutator sub-class
LOC_Os07g29650Os.35344.18.S1_x_at6/117+17429556..17432042transposon protein, putative, Mutator sub-class
LOC_Os07g29650OsAffx.22940.5.S1_x_at3/117+17429556..17432042transposon protein, putative, Mutator sub-class
LOC_Os07g29660OsAffx.22317.1.S1_at11/117+17437850..17438140hypothetical protein
LOC_Os07g29670NANA7+17438877..17442520hypothetical protein
LOC_Os07g29684OsAffx.16479.1.S1_x_at11/117+17443413..17448062hypothetical protein
LOC_Os07g29684OsAffx.16479.1.S1_at11/117+17443413..17448062hypothetical protein
LOC_Os07g29684OsAffx.28662.1.S1_at10/117+17443413..17448062hypothetical protein
LOC_Os07g29700Os.10046.1.S1_at11/117+17452353..17453549hypothetical protein
LOC_Os07g29700OsAffx.10906.1.S1_at11/117+17452353..17453549hypothetical protein
LOC_Os07g29710OsAffx.22314.2.S1_at11/117+17460700..17460948hypothetical protein
LOC_Os07g29710OsAffx.22314.1.S1_x_at4/117+17460700..17460948hypothetical protein
LOC_Os07g29720OsAffx.28663.1.S1_at11/117+17469440..17470378hypothetical protein
LOC_Os07g29730NANA7+17473093..17477552transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10906.1.S1_at--590--9156Chr12:12381498..12381522 (25 bp)
TGCGCGCGGATGAGTTGGAAAAATT
LOC_Os12g22020
OsAffx.10906.1.S1_at--1031--4136Chr12:12381500..12381523 (24 bp)
CGCGCGGATGAGTTGGAAAAATTAA
LOC_Os12g22020
OsAffx.10906.1.S1_at--99--2211Chr07:17452516..17452540 (25 bp)
ACAACACGCGGCCTGCTTGGTTCCG
LOC_Os07g29700
OsAffx.10906.1.S1_at--964--1831Chr07:17452511..17452535 (25 bp)
ACGCGGCCTGCTTGGTTCCGCGCGT
LOC_Os07g29700
OsAffx.10906.1.S1_at--964--10653Chr09:9125399..9125423 (25 bp)
TTCCGCGCGTTGGAACCTCGGGACA
NONE
OsAffx.10906.1.S1_at--937--4133Chr09:9125394..9125418 (25 bp)
CGCGTTGGAACCTCGGGACAGCCTC
NONE
OsAffx.10906.1.S1_at--343--10873Chr09:9125390..9125414 (25 bp)
TTGGAACCTCGGGACAGCCTCGGTC
NONE
OsAffx.10906.1.S1_at--1099--8794Chr09:7325842..7325873 (24 bp)
TGTTCTGCGGCACCGACTCGCTATC
NONE
OsAffx.10906.1.S1_at--870--2952Chr07:17452407..17452431 (25 bp)
AATGGCGCCGCGGTACCGACTCGAT
LOC_Os07g29700
OsAffx.10906.1.S1_at--1000--5691Chr07:17452390..17452414 (25 bp)
GACTCGATCCCGCAGTCCAGTCGTG
LOC_Os07g29700
OsAffx.10906.1.S1_at--484--9391Chr07:17452387..17452411 (25 bp)
TCGATCCCGCAGTCCAGTCGTGCGG
LOC_Os07g29700
Target Sequence 
TGCGCGCGGATGAGTTGGAAAAATTAAGGGAAGAACCCAACTCCAACAACACGCGGCCTGCTTGGTTCCGCGCGTTGGAA
CCTCGGGACAGCCTCGGTCCCGCGCCGCTGTTCTGCGGCACCGACTCGCTATCCCGGCTCCATCGCTCCCGCGCAATGGC
GCCGCGGTACCGACTCGATCCCGCAGTCCAGTCGTGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10906.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis