Browse Element(s) Details


OsAffx.10911.1.S1_at

Description gb:NM_184320.1
DB_XREF= gi:34895719
GEN=P0019D06.18
TID=OsAffx.10911.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0019D06.18 (P0019D06.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g049704/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04960Os.35344.18.S1_x_at11/111+2296539..2302125transposon protein, putative, Mutator sub-class
LOC_Os01g04960Os.35344.3.S1_x_at9/111+2296539..2302125transposon protein, putative, Mutator sub-class
LOC_Os01g04960OsAffx.22940.5.S1_x_at3/111+2296539..2302125transposon protein, putative, Mutator sub-class
LOC_Os01g04970OsAffx.10911.1.S1_at4/111+2325426..2325658hypothetical protein
LOC_Os01g04980NANA1+2333726..2336866transposon protein, putative, unclassified
LOC_Os01g04990Os.31513.1.S1_at11/111+2346870..2350304Mitochondrial carrier protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10911.1.S1_at--674--991Chr01:2325471..2325495 (25 bp)
AGGAGGCCCTCAGCTGAGTATTCAT
LOC_Os01g04970
OsAffx.10911.1.S1_at--950--6071Chr01:2325486..2325572 (25 bp)
GAGTATTCATGGAAGCCCGCAGCTA
LOC_Os01g04970
OsAffx.10911.1.S1_at--1113--5411Chr01:2325559..2325583 (25 bp)
GAAGCCCGCAGCTAAGCATTCATGG
LOC_Os01g04970
OsAffx.10911.1.S1_at--607--471Chr01:2325626..2325650 (25 bp)
ATCTGCCGATACACTCGTGGTGGGA
LOC_Os01g04970
OsAffx.10911.1.S1_at--175--2431Chr01:2326299..2326323 (25 bp)
AAAAGCCATCGGGTCGACACATGTG
NONE
OsAffx.10911.1.S1_at--515--5631Chr01:2326314..2326338 (25 bp)
GACACATGTGCCGAAGGACTCGTCA
NONE
OsAffx.10911.1.S1_at--354--7111Chr01:2326335..2326359 (25 bp)
GTCACCTCTAAATTCCTGATGTCTC
NONE
OsAffx.10911.1.S1_at--669--2831Chr01:2326361..2326385 (25 bp)
AAGTCCCAAATATCCATTGCTATGG
NONE
OsAffx.10911.1.S1_at--300--5411NONE
GAAGCTCTGAAGATTCTGGCTCTGT
NONE
OsAffx.10911.1.S1_at--400--111Chr01:2327446..2327470 (25 bp)
ATTCTGGCTCTGTCACTGGTTAAAA
NONE
OsAffx.10911.1.S1_at--514--1331Chr01:2327475..2327499 (25 bp)
AGAGGATCTTGCTAACACCATTGTT
NONE
Target Sequence 
AGGAGGCCCTCAGCTGAGTATTCATGGAAGCCCGCAGCTAAGCATTCATGGCGAGAAGATGGGCCATTAAGGGCACATTC
AATGCCCACAACTATCTGCCGATACACTCGTGGTGGGAGCAGNNNNACCGGCGGTAGTGAAACAAACGTGGGGCAGGGCT
CGGCCCTGCCCTGCGAGCAGGATGAGGGGCCAGTCCCACCACCCATCCCTGCTGACTTGGCTGCAGCCATCCAGTCTCAG
CTGGATGATATTGCAGTCAAAAGCCATCGGGTCGACACATGTGCCGAAGGACTCGTCACCTCTAAATTCCTGATGTCTCC
AAGTCCCAAATATCCATTGCTATGGCATGAAGCTCTGAAGATTCTGGCTCTGTCACTGGTTAAAAGTACAGAGGATCTTG
CTAACACCATTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10911.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis